Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq449898 111 1e-19 seq198121 105 6e-18 seq611773 98.7 9e-16 seq713515 95.1 1e-14 seq345138 91.5 1e-13 seq235349 86.0 6e-12 >seq449898 Length=3288 Score = 111 bits (122), Expect = 1e-19 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 ||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | || Sbjct 1235 CACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACA 1294 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | || ||| | || |||| ||| || || | ||| |||| | ||||| || | ||||| Sbjct 1295 AAGTACGCCCATCTTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAA 1354 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 || ||||| ||| ||| ||| || || | | || | | || || || ||| ||| Sbjct 1355 TTCTTTCCTTATCCTGGAT-TTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACC 1413 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCGCACAC 35749 || | ||||| || || || || | ||||| ||||| |||||||| || ||| | Sbjct 1414 TCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTTGGTGGCAATC 1473 Query 35750 ACACCACA 35757 ||||||| Sbjct 1474 CCACCACA 1481 >seq198121 Length=2544 Score = 105 bits (116), Expect = 6e-18 Identities = 140/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| || ||| || | || |||||||| || || ||||| Sbjct 205 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAA 146 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || |||||||| |||||| ||| | | Sbjct 145 GATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTT 86 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT-TTTACCCGTCAAAGTTTTCA 35723 | | ||||| || | || ||||| | ||||| || || | | |||| ||||||| Sbjct 85 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTCAACAGTCAGGGTTTTCA 26 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 25 CGAAGATCTGCAT 13 >seq611773 Length=2016 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | ||| ||||||||| ||||||||||| | | Sbjct 1461 CCACCAGGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAC 1520 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| | || |||| |||||| | ||||| |||| | ||||| || | |||| Sbjct 1521 AAAGTACGCCCATCTTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1580 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| |||| ||| || || | | || | | || | || ||| || Sbjct 1581 ATTCCTTCCTTATCCTTGAT-TTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAAC 1639 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || || | ||||| | || |||||||| Sbjct 1640 CTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1687 >seq713515 Length=817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | | || || | || ||||||||||| || ||||| Sbjct 448 CTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 507 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||| || | ||| | || || || ||| |||||| ||||| | | Sbjct 508 GATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 567 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 568 CTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 627 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 628 GAAGATCTGCAT 639 >seq345138 Length=2957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || || || | || |||| ||| || || ||||| Sbjct 2350 CTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAA 2409 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | || ||||||||| ||| || ||| | | | Sbjct 2410 TATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATT 2469 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || ||| ||| || ||||| Sbjct 2470 CTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCAC 2529 Query 35725 AAATATCTGCATTCTGTGCG 35744 || ||||||| ||| |||| Sbjct 2530 GAAGATCTGCA-TCTTTGCG 2548 >seq235349 Length=927 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGT--ACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||| || | | || ||||| ||| | || |||||| | || |||||||| || | Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTC--TCTGGATGTTGTAGTCAG 89 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||||||| || ||||||||||||| |||||||||| | | Sbjct 90 AGACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTG 149 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | || ||||||||| | | || ||| | | | | | ||||| || || || | Sbjct 150 AGATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGA 209 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 |||| | ||||| || || || |||| || |||| || ||||||| ||| |||| Sbjct 210 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCA-TCTTTGCG 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446054598470480