Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq382080 190 2e-43 seq75476 116 3e-21 seq345281 113 4e-20 seq445742 109 4e-19 seq436660 109 4e-19 seq59382 91.5 1e-13 >seq382080 Length=1803 Score = 190 bits (210), Expect = 2e-43 Identities = 497/748 (66%), Gaps = 19/748 (3%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| |||| || |||| || | || || || || |||||||| |||| || ||| Sbjct 1361 GTTCTGGCTTTCTTTGTAGCATGTGATGGCATCGTAAATGAAAACCTGGTGGAGCGATTT 1302 Query 43910 GCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| || Sbjct 1301 AGCCAAGAAGTTCACATTAC-AGAAGCCCGCTGTTTGTATGGCTTCCAAATTGCCATGGA 1243 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| || | ||| |||||||| ||| | || || || || ||||| |||||| | || Sbjct 1242 AAACATACCTTCTGAAATGTATAGTTTCCTTATTGACACTTACATTAAAGATTCCAAAGA 1183 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 | | | || || | ||| || ||||| | ||| | || | || ||||| || Sbjct 1182 AAGGGAATTTTTCTTCAGTGCCATTGAAACCATGCCTTGTGTCAAGAAGAAGGCAGATTG 1123 Query 44089 GGCCCTTAAATGGA-TAAATTCAAATGA---TTCTTTTGGAGAACGACTTGTCGCGTTTG 44144 |||| | |||| | |||| || | | | ||||||||| ||| || |||| Sbjct 1122 GGCCTTGCGTTGGATTGGGGACAAAGGAGGCTACCTATGGAGAACGTTGTGTAGCTTTTG 1063 Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 ||| || ||||| || |||||| | || |||||||| ||||| ||| | ||| ||| Sbjct 1062 CAGCAGTAGAAGGAATCTTCTTTACTGGCTCGTTTGCATAGATATTCTGGCTCAAGGAAC 1003 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 || | |||||||||| | || ||||| ||||| | || || | ||||| | |||| Sbjct 1002 GAAGACTGATGCCTGGTCTCACATTTTCCAATGAACTGATTAGCAGAGATGAGAGTTTAC 943 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 | || || |||| | | || | | | | || | || || || | | ||| Sbjct 942 ACTGTAATGTTGCCTACCTGATGTTCAAACACCTGCTACACTAT---CCGTTAGAGCAGA 886 Query 44325 CAATTACAGATATTGTTGTAGAGGCAGTAAAGA-TAGAACAAGAATTTATGACAACAGCA 44383 | | | ||| || || | | || || |||| | ||||| || || | ||| || Sbjct 885 GAGTGAAAGAAATCATTATCAATGCTGTCAAGAGTGGAACAGGAGTTCCTCACAGAGGCT 826 Query 44384 TTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACAT 44442 || ||||| || | || | ||||| || | |||||||| || || ||||| | | Sbjct 825 TTGCCTGTGAAGCTCATTGAGATGAACTG--CGCTTGATGAAGCAGTACATTGAGTTTGT 768 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGG---TTGCGATAAACACTATATTGTACAAAACCC 44499 || || | | | |||||||||| | ||| | | | ||| ||| || Sbjct 767 GGCCAATAGACTTATGCTGGAACTGGGATTTAGCG---AGGTTTTCAGAGTAGGAAATCC 711 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 ||||| |||||||| ||||||| ||||||| || || ||||| ||||| || | || Sbjct 710 ATTTGACTTTATGGAGAATATTTTACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGT 651 Query 44560 TGGAGAATATCAGCGAATGGGCGTCATG 44587 || || |||||| | ||||| || ||| Sbjct 650 AGGTGAGTATCAGAGGATGGGAGTTATG 623 >seq75476 Length=7337 Score = 116 bits (128), Expect = 3e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 47237 TATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTA 47296 ||| | ||| | || ||| | ||||||| || || || ||||| ||||| || |||| Sbjct 5743 TATAAGAAAACTGGTAAATTGGTATTTCTTGGATTGGATAATGCGGGAAAGACAACATTG 5684 Query 47297 CTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCCGACCTCT 47356 || |||||||| ||| | | | | | ||||| ||| ||| | ||||| || || Sbjct 5683 CTACACATGCTAAAAGATGACAGACTTGGACAGCATGTCCCAACACTGCATCCCACATCA 5624 Query 47357 GAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGGAGGACACATTCAA 47416 ||| |||| || ||||||||||| || | || || |||||| | || ||||| |||||| Sbjct 5623 GAAGAACTGACCATTGCTGGCATGACTTCTACAACTTTTGATCTGGGTGGACATATTCAA 5564 Query 47417 GCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGTTTATATTGTAGAC 47476 || | ||| ||||| || | || ||| || || ||| || || | | | || || Sbjct 5563 GCTCAAAGAGTGTGGAAACACTACCTTCCTGCTATTAATGGCATTGTATTTTTGGTGGAT 5504 Query 47477 TGTGCAGAT 47485 ||||||||| Sbjct 5503 TGTGCAGAT 5495 >seq345281 Length=2749 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | | || ||||| ||||| ||||||| |||| Sbjct 2472 TGATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGATGGTGAGCTGT 2531 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| |||||||| || || || || || ||||| || | Sbjct 2532 CCTGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATTGCCA 2591 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| |||||||||||||||||||||||| Sbjct 2592 GCTATGCCCTGCTCACGTATATGATTGCACAC 2623 >seq445742 Length=1839 Score = 109 bits (120), Expect = 4e-19 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 47222 CAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCA 47281 || ||||||||| | || | ||| | || ||| | ||||||| || || || |||| Sbjct 81 CAGTTTTTAGGATTATAAAAGAAAACTGGTAAATTGGTATTTCTTGGATTGGATAATGTG 140 Query 47282 GGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACA 47341 ||||| || | || || ||||| || ||| | | | | | ||||| ||| ||| Sbjct 141 GGAAAGACAACGTTGCTACACATACTAAAAGATGACAGACTTGGACAGCATGTCCCAACA 200 Query 47342 TTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTA 47401 | |||| || || ||| |||| || ||||||||||| || |||| || |||||| | Sbjct 201 CTGCATCTCACATCAGAAGAACTGACCATTGCTGGCATGACTTTTACAACTTTTGATCTG 260 Query 47402 GGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATA 47461 || ||||| ||||||| || ||| ||||| |||| || || || || ||| || Sbjct 261 GGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTACCTTTCTGCTATTAATGGCATT 320 Query 47462 GTTTATATTGTAGACTGTGCAGA 47484 || | | | || || |||||||| Sbjct 321 GTATTTTTGGTGGATTGTGCAGA 343 >seq436660 Length=1326 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| || ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 215 CAAGAAGTTCAGATAACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 156 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 155 ATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 108 >seq59382 Length=1206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 845 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 786 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| ||| |||||||| | | || ||| ||| | || ||| |||| Sbjct 785 AACGAGTTTCAGAGTATCAGCGTTTTGCAGTTATGGCAGAAACCACAGATAATGTCTTTA 726 Query 44610 CTACGGATGAAGATTTCTAAT 44630 | ||||| |||||| |||| Sbjct 725 CCTTGGATGCAGATTTTTAAT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393382171141030