Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq631619 132 6e-26 seq629557 91.5 2e-13 >seq631619 Length=7703 Score = 132 bits (146), Expect = 6e-26 Identities = 499/765 (65%), Gaps = 32/765 (4%) Strand=Plus/Plus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 || ||||| ||| || |||| | | ||| | | ||||||||| | || || ||| Sbjct 1874 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAATGTAGATGTTGCTGGTATAAGGT 1933 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 |||| | | |||||||| |||||||| || || || | || || | |||||| || || Sbjct 1934 TCAATGGACTCATTATTCCCCAAGATCTGAGCAGTTGCAGCAGTAGTCATTGGGGCAATA 1993 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | | |||||| | | ||| | || ||| || |||||||||| | |||||| Sbjct 1994 AGTAAACTGTTTCTTACACCATACT--TTGCAATCTTGTCCTTGAGAAGTTTCCAGTCCC 2051 Query 110847 A--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | | | || | || |||| ||| |||| ||||||| | ||| | | || Sbjct 2052 ACAGGTCTG-TGGGAGTAACATTCC-ACACGTCATACTGAAGAATTTCTTTGCTTACTGG 2109 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 110964 ||| |||||| ||||||| || | ||| | ||| |||| |||||||| || |||| Sbjct 2110 AGAGCCCTCATAGGTTTCCTATGGACCATACTCTTTGGCCAGGTCACAGCTGGCTTCCAA 2169 Query 110965 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA-- 111022 || | | | ||| || |||| |||||| | ||||| || | | || || | Sbjct 2170 GGCTCCATAATAAATAGTTTGAAAGATTTGCTTATTCAGTAACTGGACCTC---TGGACT 2226 Query 111023 -TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 111081 ||||||| || | ||| ||||| || | || ||| ||||||| || | ||||| Sbjct 2227 TTCAAATGGATATCTCATCAAGATAAAAGCAACAGCCAGAACTTGAACCCCAATTCCAAT 2286 Query 111082 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTC 111138 || || || |||| || | || | ||| || || || | ||||| | Sbjct 2287 GGGGTGATGGCGTTTATTTGA--TACGTAT-GCCTCTGGAATAGGGTAGTAGTTTCTATT 2343 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATA 111195 ||| | | || | | ||| | |||||| ||| |||| |||| || || | | | Sbjct 2344 AATAATTTTATTCA-AGTTTCG--AACAATGACTTCAGTGACTTCAGCCAGCTTCTTAAA 2400 Query 111196 ATCAAAAGTGCGAGTCTCTTCAT-TGACATACTTTGGAAGGGCGATTGATGCCAAATTGC 111254 || || || || | | || |||||||| | ||||| | || ||||| || | Sbjct 2401 GTC----GTACGTGTGTTCTGATGTGACATACATATTCAGGGCCAGGGAAGCCAAGTTAC 2456 Query 111255 AAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCT 111314 |||| || ||| || || || ||||||| |||||||| || | |||| | | Sbjct 2457 AAACTGCAACCTCCTCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATT 2516 Query 111315 TAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGT 111374 | || | |||| |||| ||||| ||||| | || || | || ||||||||||||| Sbjct 2517 TGATTGCTCCCAGGTTCTGCTGGTTGCTCTTATGATTACAGGAATTTTTGTAGAGCATGT 2576 Query 111375 AGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||| || | ||||| ||||| || | | |||||| | ||||| Sbjct 2577 AGGG-GTGTCAGTCTCTGTCTGAGACTCAATAATAGCATACCAAA 2620 >seq629557 Length=4010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| |||||||| || | |||| | || || || || Sbjct 1408 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCC 1349 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| || || | ||| ||||||||||||||||| || || Sbjct 1348 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTAGGGGGTACC 1289 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||| ||||| || | | |||||| | ||||| Sbjct 1288 AGTCTCTGTCTGAGACTCAATAATAGCATACCAAA 1254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621429766497600