Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq638653 100 3e-16 seq517911 93.3 5e-14 >seq638653 Length=2917 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||||||||| ||||| ||| ||| || || ||||| || Sbjct 487 GTGAAAATGTAACGAGGACTTGCAGCATCTTTGCCGCCATGAAGCCGAGTCCCGAACTGG 428 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || | || ||||| | |||||| |||||| ||||| ||||||| || ||| Sbjct 427 CCGATGGGTTGCAGCAGGTTAATGTTGTTACTGCCCACGAAGTTCTGAGCCAGATTCACA 368 Query 117425 ATCGT 117429 ||||| Sbjct 367 ATCGT 363 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | || || ||||| ||||| || ||||| || || ||||| Sbjct 487 GTGAAAATGTAACGAGGACTTGCAGCATCTTTGCCGCCATGAAGCCGAGTCCCGAACTGG 428 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||| | || ||||| | |||||| ||||||||| |||||||||| ||||||| Sbjct 427 CCGATGGGTTGCAGCAGGTTAATGTTGTTACTGCCCACGAAGTTCTGAGCCAGATTCACA 368 Query 152149 ATCGT 152153 ||||| Sbjct 367 ATCGT 363 >seq517911 Length=2699 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||| ||||||||||| || | ||||||| Sbjct 1250 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 1309 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || ||| || || || |||||| || ||||| ||| |||||||| Sbjct 1310 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1369 Query 74892 ACAA 74895 |||| Sbjct 1370 ACAA 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541463350758800