Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq572090 100 3e-16 seq749787 93.3 5e-14 >seq572090 Length=2006 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| ||| |||||| || ||| | || |||||| | || ||| | || || | Sbjct 1718 ATAGCTGCAGCGCTGTGGTGGTACTTTGTATCGAAAGGTGTTGAGTATTTGGACACAGTG 1659 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 || || || | || |||||| ||||||||| || | ||||||||||| || | | Sbjct 1658 TTTTTTATCCTAAGGAAGAAAAACAACCAAGTTTCTTTCCTTCACGTATACCATCACTGT 1599 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 ||||||||||| || | |||||||| ||||||||| | ||||| ||||| Sbjct 1598 ACCATGTTTACATTGTGGTGGATAGGAATTAAATGGGTCGCAGGGGGACA 1549 >seq749787 Length=1786 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||| | ||| |||| | || || ||||| | || || || Sbjct 1414 ACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTGCAATTCGGTCACCT 1473 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||||| | | ||| | |||||| || Sbjct 1474 TTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTCTA 1533 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| | || || || ||||| || || Sbjct 1534 TAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTGCAGCCAAGCCAGAA 1593 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| | || || | | |||| ||| |||||| | || Sbjct 1594 CATGGAGCTACTCTTCCATAACACCCAGAAGGAAGAGCTATCTGAATGTCAGTCTTCACA 1653 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| |||||||| | | ||||| ||| || || || || || || || || Sbjct 1654 AGGGCTTTCTCCATAGGTGGCACTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGC 1712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596839816601440