Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq551660 116 5e-21 >seq551660 Length=10507 Score = 116 bits (128), Expect = 5e-21 Identities = 235/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| ||||| || || |||||| | || ||||| || || ||| | Sbjct 3623 GAAGAGGCGGAGTTTCCGATCGCATATTCTATCGTGGTTCATCACAAAATTGAAATGCTT 3564 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | |||||||||||||||||| || ||||| |||| ||| | ||||||||| Sbjct 3563 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATTCACGTGGACAGA 3504 Query 13803 AAGTCCGGCGACGAGTTC--ATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 ||||| | || ||| | | | || | | | |||| | || |||| ||||| Sbjct 3503 AAGTCAGAGGAGTCCTTCTTAGCTGCGGTGACCAG--CATCACGTCCTGTTTCCGTAACG 3446 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | | ||||| | | || | |||||| || | || |||||||| || ||||||| Sbjct 3445 TCTTCGTGGCCAGTCAGTTGGAGAGCGTGGTTTATGCATCGTGGAGTCGAGTTCAGGCCG 3386 Query 13921 ACCTCAGCTGCATGTCGGACCTGGA-CGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 | |||| ||||||| ||||| | || | | | | |||| |||| || |||| Sbjct 3385 ATCTCAACTGCATGAAAGACCTCTACCGAATGAGCACAC-ACTGGAAGTACTTGATCAAT 3327 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 || || || ||| || || | || ||||||||||| || || Sbjct 3326 CTCTGTGGTCAGGATTTTCCTATTAAAACCAACCTGGAAATTGT 3283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651814154754560