Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq345281 134 1e-26 seq732468 113 4e-20 seq242529 113 4e-20 seq675419 87.8 1e-12 seq135672 84.2 2e-11 >seq345281 Length=2749 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2634 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2575 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||||||||| || || ||||| || || | Sbjct 2574 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2515 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 2514 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAG 2471 >seq732468 Length=3300 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || ||||| ||||||||||| || || || || |||| ||| || |||| Sbjct 2557 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2498 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | ||| ||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 2497 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2438 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| ||| || || |||| ||||||||| || Sbjct 2437 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2398 >seq242529 Length=4194 Score = 113 bits (124), Expect = 4e-20 Identities = 171/240 (71%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 1133 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 1192 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 1193 TAAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGGTATT 1252 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 110557 || || ||| |||||||| || | ||||| || |||| | ||||| || || | Sbjct 1253 TTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 1311 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCT-GGACAC 110616 ||| ||| |||| ||||| || ||||| || ||||||||||| ||| |||||| Sbjct 1312 TGAGT------GGAGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGGGACAC 1365 >seq675419 Length=1260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 940 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 881 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||| ||||||||| || ||||| || || ||||| |||||||| ||||| || Sbjct 880 TAAAGGCTGATTCTTTTCAGGAATGGAAAATCAGGTCTTCCTACCCATAATCACGGTATT 821 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 110557 || || ||| |||||||| | | ||||| || |||| | ||||| || || | Sbjct 820 TTGTTTACCTTCTACTGAAGAAATTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 762 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 110615 || ||| | |||| ||||| || || || || |||||||||||| ||| ||||| Sbjct 761 TGAG-----CAG-AGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGGGACA 708 Query 110616 C 110616 | Sbjct 707 C 707 >seq135672 Length=2989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 110398 TCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCG 110457 || || || || || ||||| |||| || || | || | | ||| | ||||||||| Sbjct 1418 TCCTTGAGTTCTCTACTGAGAACTAAATTAATTTTATCCTTTAAAGGCCAATTCTTTTCA 1359 Query 110458 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAA 110517 || ||||| ||||| ||| | ||||| |||| | ||||| || ||| |||| | Sbjct 1358 GGAATGGAAAACCAGACCTTCCCCCCCATAGTCACGATATTCTGTTTACCTTCTACTGTA 1299 Query 110518 GACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCA 110576 | || | ||||| || |||| || ||||| || || | ||| ||| |||| Sbjct 1298 GCGGTGGTGGTCATCCTCTGGAAA-TGCTTAAATTCATTCCTGAGT------GGAAGCCA 1246 Query 110577 CGGCAGATCTCCGTTGTTCCCGATGCCCATGTCT-GGACACG 110617 ||||| || ||||| || ||||||||||| ||| ||||||| Sbjct 1245 GGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGGGACACG 1204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402145815660552