Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq335148 104 1e-17 seq345138 96.9 2e-15 >seq335148 Length=7748 Score = 104 bits (114), Expect = 1e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| | ||||| ||||| |||||| ||| ||| || || |||||||| || ||||| Sbjct 7082 CCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAAAGA 7141 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || | ||||| || ||||| ||||||||||| | |||||| |||| || || | Sbjct 7142 GTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTAGGTGGGATG 7201 Query 34603 CCCTCCTTGTCTGTGATCTT 34622 |||||||||||| ||| || Sbjct 7202 CCCTCCTTGTCTTGGATTTT 7221 >seq345138 Length=2957 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||||| ||||| ||||| ||| ||| || || ||||| || || || Sbjct 2314 GCCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 2373 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || | ||||| ||||||||||| | |||||| ||||| || || Sbjct 2374 CAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGG 2433 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | || || | || ||||| | ||| | Sbjct 2434 GATGCCCTCCTTGTCTTGGAT-TTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 2492 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || || || || | | || ||||| || |||||||| || Sbjct 2493 CCTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTT 2544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 311503696938398