Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq345281 165 7e-36 seq732468 116 3e-21 >seq345281 Length=2749 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||||||| || || ||||| | |||||||| |||||||| | | || Sbjct 2462 GATCTCCCTCTGATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGAT 2521 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||||||||||||||| || | || ||||||||||| | || ||||| ||| Sbjct 2522 GGTGAGCTGTCCTGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTC 2581 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || ||||||||||| ||||| || || Sbjct 2582 AACATTGCCAGCTATGCCCTGCTCACGTATATGATTGCACA 2622 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||| ||||||||||| || || || ||||||||||| ||||| || | ||| Sbjct 2622 TGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 2563 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || |||||||||||||||||||| |||| | | |||||||| ||| Sbjct 2562 ATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACCACGTAGAACTGG 2503 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | ||||| || || |||||||||||||||||||| Sbjct 2502 CAGAGCGCATGGCATGGAGGCAGCGCCATCAGAGGGAGATC 2462 >seq732468 Length=3300 Score = 116 bits (128), Expect = 3e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| ||||||| || || || ||| ||||| |||||||| || | || |||| Sbjct 2402 CCACAAACGCCAAGGAACTATCTTCTAAGGGAGTGAAAATCTGGGATGCCAATGGATCTC 2461 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||| | | | || || ||||||||||| || || | Sbjct 2462 GAGACTTTTTGGACAGCCAGGGATTCTCCACCAGAGAAGAAGGCGACTTGGGTCCTGTTT 2521 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| |||||||| || || Sbjct 2522 ATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 2555 Score = 116 bits (128), Expect = 3e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| |||||||||||||| || || || || ||||||||||| || || Sbjct 2555 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTTCT 2496 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| |||||||||||| || | || |||||||| ||| Sbjct 2495 CTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTC 2436 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| || || || ||||||| ||| |||| Sbjct 2435 ACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGG 2402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443550007900320