Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq489007 199 3e-46 seq242529 179 3e-40 seq498336 159 3e-34 seq135672 150 1e-31 seq675419 132 4e-26 seq62970 93.3 3e-14 seq345281 82.4 6e-11 >seq489007 Length=952 Score = 199 bits (220), Expect = 3e-46 Identities = 363/523 (69%), Gaps = 15/523 (3%) Strand=Plus/Minus Query 2167 AATATGGGCATTGGAA--ACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTA 2224 || |||||||| |||| || ||| | |||| |||||||| || | |||||| ||| Sbjct 946 AACATGGGCATCGGAAGAACCAGG---ACTTGCCCTGGCCTCCGCTCAGGAATGAACTTA 890 Query 2225 AACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTA 2281 | |||| || | |||||| | | ||||| || ||||| ||| | || |||| Sbjct 889 ATTATTTCCAGAGAATGACCACAACCTCTTCAGTAGAAGGTAAACAAAATATCGTGATTA 830 Query 2282 TGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAAT 2339 |||| || ||||| |||||||| |||| | ||||| | ||||||| || ||||||| Sbjct 829 TGGGTAGGAAGACCTGGTTTTCCATTCC--TGAAAAGAATCGGCCTTTAAAAGACAGAAT 772 Query 2340 AAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAA 2399 ||| || ||||||||||| | || || || || ||||| || ||||||||| |||| || Sbjct 771 TAATTTG-TTCTCAGTAGAGAACTCAAGGAACCTCCACGAGGAGCTCACTTTCTTGCCAA 713 Query 2400 AAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAA 2459 ||| | ||| | || || || |||| |||||||||| | ||||| | Sbjct 712 GAGTCTGGATGATGCCCTAAAACTTATTGAGCAACCAGAATTAGCTAATCAAGTGGACAT 653 Query 2460 GATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCAT-TACAAGATCTTGCAAAC 2518 | |||||||| | || || | ||||| ||| |||| ||| || || | || | | Sbjct 652 GGTTTGGATAGTGGGAGGTTGTTCTGTTTATAAGGAAGCCATGAACCAG-CCAGGCCATC 594 Query 2519 AGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAA 2578 | ||||| | |||||||| |||| | |||||| ||||||| | || ||||||| Sbjct 593 TTAAACTGTTCGTGACAAGGATCATGCAGGATTTTGAAAGTGATACCTTTTTTCCAGAAA 534 Query 2579 TTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAG 2638 || || | ||||| |||| || | |||| |||||||||| ||||| || || | Sbjct 533 TTGATTTGGAGAAATATAAACTTCTCCCAGAATACCCAGGTGTTCTCTCTGATGTCCAGG 474 Query 2639 AAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 | || || || |||| || || | ||| | |||||||| || Sbjct 473 AGGAGAAAGGCATTAAGTATAAGTGTGAAGTGTATGAAAAGAA 431 >seq242529 Length=4194 Score = 179 bits (198), Expect = 3e-40 Identities = 373/545 (68%), Gaps = 13/545 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||| |||| || | ||||| || | || |||||||| || || || || | ||||| Sbjct 1383 CTAGACTGCATCGTCGCTGTGTCCCAGAA-ATGGGCATCGGCAAGAACGGGGACCTGCCC 1325 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 |||||||| || | ||||||||||| |||| || | |||||| | | ||||| Sbjct 1324 TGGCCTCCACTCAGGAATGAATTTAAGTATTTCCAGAGAATGACCACAACCTCTTCAGTA 1265 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||| ||| || |||||||| || ||||| |||||||| |||| | ||| Sbjct 1264 GAAGGTAAACAAAATACCGTGATTATGGGTAGGAAGACCTGGTTTTCCATTCC--TGAAA 1207 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | ||||||| || | ||||| ||| | |||||||||||| | || || || || | Sbjct 1206 AGAATCGGCCTTTAAAGGATAGAATTAATTTAGTTCTCAGTAGAGAACTCAAGGAACCTC 1147 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA- 2433 |||| || ||||| ||| |||| |||||| | ||| | || || || |||| || | Sbjct 1146 CACGAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCCTAAAACTTAT-TGAGCAG 1088 Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 || |||||| | ||||| | | |||||||| || || | ||||| ||| || Sbjct 1087 CCTGAATTAGCTAATCAAGTGGACATGGTTTGGATAGCAGGAGGTGGTTCTGTTTATAAG 1028 Query 2494 GAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 || ||| || || | || | | | | ||| | |||||||| |||| | || Sbjct 1027 GAAGCCATGAACCAG-CCAGGCCATCTTAAACCGTTCGTGACAAGGATCATGCAGGATTT 969 Query 2553 TGAATGTGATA-CATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 |||| |||||| | | || ||||||||| || | ||||| |||| || | | || Sbjct 968 TGAAAGTGATACCTTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTCCCAGGAT 909 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 |||||||||| |||| | || || || || || |||| || || ||||| | | Sbjct 908 ACCCAGGTGTTCTTTCTGATGACCAGGAGGAGAAAGGCATTAAGTATAAGTTTGAAGTGT 849 Query 2672 ATGaa 2676 ||||| Sbjct 848 ATGAA 844 >seq498336 Length=2642 Score = 159 bits (176), Expect = 3e-34 Identities = 229/319 (72%), Gaps = 3/319 (1%) Strand=Plus/Plus Query 1209 GTTGTAACCCAGGATGAAGCAACACCACTTGGAGACCCCGTTTCTATTAAG-TGTTTTTT 1267 || || |||||||||||| | |||||| | | || || | | ||||| |||| | | Sbjct 803 GTGGTGACCCAGGATGAAAGAGAACCACT-GAACACACCTGCTTTCTTAAGATGTTCTCT 861 Query 1268 AGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGA 1327 ||| | || ||||| | | ||| |||||||| ||| || || |||||||| Sbjct 862 GCAAAGTTCCCAGGAAGTCTTAAGTGTGACATGGCAGAAAAAGAAGGCTGTCAGCCCAGA 921 Query 1328 AAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAA 1387 |||||||| ||| || || || |||| || ||||| | ||||| || || || || | Sbjct 922 AAACATGGTCACCTTCAGCAAGAACCATGGTGTTGTGATCCAGCCTGCCTATAAGGACAG 981 Query 1388 AATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAA-CACAACAT 1446 ||| || || || ||||| ||||| |||||| | || || ||||||||||| | | | Sbjct 982 AATCAATATCACCGAGCTGGGACTCCAAAACTCGACCATCACCTTCTGGAATCCCCCCCC 1041 Query 1447 TGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAG 1506 |||| ||||| ||||| |||| |||| | || || || ||||| ||||| ||||| |||| Sbjct 1042 TGGAAGATGAGGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGAAAGATCTCAG 1101 Query 1507 GAATAGGGTGTCTAACCCT 1525 ||| | || || ||||| Sbjct 1102 GAACATCCTGCCTCACCCT 1120 >seq135672 Length=2989 Score = 150 bits (166), Expect = 1e-31 Identities = 341/505 (68%), Gaps = 11/505 (2%) Strand=Plus/Plus Query 2170 ATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACAT 2229 |||||||| || || || || | ||||| |||| ||| || | ||||||||||| ||| Sbjct 1216 ATGGGCATCGGCAAGAACGGGGACCTGCCCTGGCTTCCACTCAGGAATGAATTTAAGCAT 1275 Query 2230 TTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATGGGA 2286 || || | ||||| | | | || | | ||||||||| | || | |||||| Sbjct 1276 TTCCAGAGGATGACCACCACCGCTACAGTAGAAGGTAAACAGAATATCGTGACTATGGGG 1335 Query 2287 AGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAAATC 2344 | ||| |||||||| |||| | ||||| | ||||||| || | | ||| ||| Sbjct 1336 GGGAAGGTCTGGTTTTCCATTCC--TGAAAAGAATTGGCCTTTAAAGGATAAAATTAATT 1393 Query 2345 TGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTA 2404 | |||||||||||| | || || || | | || | ||||| ||| |||| ||||| Sbjct 1394 TAGTTCTCAGTAGAGAACTCAAGGAACTGCTACAAAGAGCTCATTTTCTTGCCGAAAGTC 1453 Query 2405 TAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTT 2464 | ||| | || | || |||| | |||||||||| | ||||| | | ||| Sbjct 1454 TGGATGATGCCCCAAAACTTATTAAGCAACCAGAATTAGCTAATCAAGTGGACATGGTTT 1513 Query 2465 GGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATG 2523 ||||| | || || || ||||| ||| |||| ||| || || | || | | | Sbjct 1514 GGATAGTGGGAGGTAGTTCTGTTTATAAGGAAGTCATGAACCAG-CCAGGCCATCTTAAA 1572 Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 ||||| | | ||||| || | | |||||| ||||||||| || ||||||||| || Sbjct 1573 CTGTTCATGAGGAGGATCATGTAGGATTTTGAAAGTGATACATTTTTTCCAGAAATTGAT 1632 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 | |||||||||| || | |||| ||||||||| |||| || | ||||||| Sbjct 1633 TTGGGGAAATACAAACTTCTCCCAGAATACCCAGGTGTTATTTCTGATGT-CCAGAAGAA 1691 Query 2644 -AATGGAATTAGATACAAATTTGAG 2667 || || |||| || ||||||||| Sbjct 1692 GAAAGGCATTAAGTATAAATTTGAG 1716 >seq675419 Length=1260 Score = 132 bits (146), Expect = 4e-26 Identities = 350/532 (66%), Gaps = 37/532 (7%) Strand=Plus/Plus Query 2156 CTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAA 2215 |||| || | || |||||||| || || || || | ||||| ||||||| || | | Sbjct 705 CTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCCTGGCCTCTGCTCAGGA 764 Query 2216 ATGAATTTAAACATTTTCAAAAAATGACATC---TTCTTCCACTGACTTAAAACAGAATG 2272 |||||||||| |||| || | |||||| | |||||| || ||||| ||| Sbjct 765 ATGAATTTAAGTATTTCCAGAGAATGACCACAATTTCTTCAGTAGAAGGTAAACAAAATA 824 Query 2273 TTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAG--GCCTTTGAA 2330 || |||||||| || ||||| || ||||| |||| | ||||| | |||||| || Sbjct 825 CCGTGATTATGGGTAGGAAGACCTGATTTTCCATTCC--TGAAAAGAATCAGCCTTTAAA 882 Query 2331 CAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTT 2390 | ||||| ||| | |||||||||||| | || || || || ||||| || ||||| || Sbjct 883 GGATAGAATTAATTTAGTTCTCAGTAGAGAACTCAAGGAACCTCCACGAGGAGCTCATTT 942 Query 2391 TGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAG 2450 | |||| |||||| | ||| | || || || |||| || ||| | || | Sbjct 943 TCTTGCCAAAAGTCTGGATGATGCCCTAAAACTTAT----TGAGCAGCCTGAATA----- 993 Query 2451 GGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCAT-TACAAGAT 2509 || ||| |||| | ||||| ||| |||| ||| || || Sbjct 994 GGGGGA----------------GGTG---GTTCTGTTTATAAGGAAGCCATGAACCAG-C 1033 Query 2510 CTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACT 2569 | || | | | | ||| | |||||||| |||| | |||||| ||||||| | | Sbjct 1034 CAGGCCATCTTAAACCGTTCGTGACAAGGATCATGCAGGATTTTGAAAGTGATACCTTTT 1093 Query 2570 TCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTG 2629 | | ||||||| || | ||||| |||| || | | || |||||||||| |||| Sbjct 1094 TTCTAGAAATTGATTTGGAGAAATATAAACTTCTCCCAGGATACCCAGGTGTTCTTTCTG 1153 Query 2630 CCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || || || || || |||| || || ||||| | |||||||| || Sbjct 1154 ATGTCCAGGAGGAGAAAGGCATTAAGTATAAGTTTGAAGTGTATGAAAAGAA 1205 >seq62970 Length=5228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 2215 AATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || |||| || | |||| ||| | ||||| | || ||||||||| Sbjct 3051 AATGAATTCAAGTATTTCCAGAGAATGGCCACAACCTCTTCAATAGAAGGTAAACAGAAT 3110 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA-AAGCAGGCCTTTGAA 2330 | || |||||||| || |||| || ||||| ||||| || || || | ||| || Sbjct 3111 ATGGTGATTATGGGTAGGGAGACCTGATTTTCCATTCCCCAAAAGAATCAA-CTTTTAAA 3169 Query 2331 CAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTT 2390 ||||||| ||| | |||||||||||| | || || ||||| | || || ||||| || Sbjct 3170 GGACAGAATTAATTTAGTTCTCAGTAGAGAACTCAAGGAGCCTCTACAAGGAGCTCATTT 3229 Query 2391 TGTTGCAAAAAGTATAGAT 2409 | |||| ||||| | ||| Sbjct 3230 TCTTGCCCAAAGTTTGGAT 3248 >seq345281 Length=2749 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 118532 TAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAG 118591 |||| ||||| | ||| |||||||| || || | || |||||||| | || || | Sbjct 2636 TAAGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGG 2577 Query 118592 GAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTG 118651 | || ||||| ||||||||| |||| |||||||| | ||||| || ||||| || | Sbjct 2576 GCACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCA 2517 Query 118652 CAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 | || || ||||| | | || ||||||||||| |||| Sbjct 2516 CCACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCAT 2474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410228512015384