Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq335148 107 2e-18 seq345138 104 2e-17 seq235349 89.7 4e-13 >seq335148 Length=7748 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||||| || || ||||| || | ||| || || | || || Sbjct 7096 CACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCTTC 7155 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG-TCGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| |||||||| |||||||||||| | |||||| | || ||| ||||| Sbjct 7156 CAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTAGGTGGG-ATGCCCTCCTTGTCTT 7214 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| || | | || || || | | || | | ||||| | | Sbjct 7215 GGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGACCTTGAGGGTGATGGTCT 7274 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | |||||||| || || || ||||| ||||||||| || Sbjct 7275 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTTGCG 7312 >seq345138 Length=2957 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || || || || | Sbjct 2314 GCCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 2373 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || || | ||||||||| |||||||| |||||||||||||| | ||| Sbjct 2374 CAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGG 2433 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| ||||| |||||| |||| || | | || || || | ||| || Sbjct 2434 GATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 2493 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || | ||||| | || ||| |||| || || || ||||| ||||||||| || Sbjct 2494 CTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTTTGCG 2548 >seq235349 Length=927 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||| | || || || || || | | || || | || || Sbjct 49 CACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAGACAGTGCGGCCATCTTC 108 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||||||||||| || |||||||||||| | | || ||| ||||| Sbjct 109 CAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAGATGCCCTCCTTGTCTTG 168 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | |||| |||| || | | || || || ||||| || || | ||||| | || Sbjct 169 GGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACCTCGAGGGTGATGGTCTT 228 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || ||||| || || | ||||| ||||||||| || Sbjct 229 GCCTGTCAGGGTCTTCATGAAGATCTGCATCTTTGCG 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425142860422478