Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq345281 154 1e-32 seq242529 104 2e-17 seq732468 96.9 3e-15 >seq345281 Length=2749 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| |||||| Sbjct 2634 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2575 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||||||||||||||||||||| || ||||| || || | Sbjct 2574 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2515 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||| ||||| || ||||| ||| Sbjct 2514 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAGA 2470 >seq242529 Length=4194 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | || || | Sbjct 1133 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 1192 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 1193 TAAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGGTATT 1252 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 114440 || |||||| | ||||| || | ||||| || |||| | ||||| || || | Sbjct 1253 TTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 1311 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCT-GGACAC 114499 ||| ||| |||| ||||| || ||||| || ||||||||||| ||| |||||| Sbjct 1312 TGAGT------GGAGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGGGACAC 1365 >seq732468 Length=3300 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 2543 AAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTTCTCTGGTGGAGAAT 2484 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||||| |||||||| || || ||||| Sbjct 2483 CCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTCACTCCCTTAGAA 2424 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || |||| ||||||||| || Sbjct 2423 GATAGTTCCTTGGCGTTTGTGGATCC 2398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402000124425316