Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq382080 212 5e-50 seq749787 118 9e-22 seq339167 116 3e-21 seq436660 100 2e-16 seq434942 89.7 4e-13 seq59382 86.0 5e-12 >seq382080 Length=1803 Score = 212 bits (234), Expect = 5e-50 Identities = 510/763 (67%), Gaps = 13/763 (2%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || ||||| | ||||||| |||||||| ||||| Sbjct 650 TACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCATAAAGTCAAA 709 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 ||||| | | || || | | | || | | | | || | || || Sbjct 710 TGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTCTATTGGCCAC 769 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450 ||| || || ||||| |||| | ||||||| || |||| | ||||||| | || Sbjct 770 AAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCACAGGCAAAGC 828 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTT-ACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | ||| | ||||| ||||| | || || || | | || || ||||| | | | | Sbjct 829 CTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATTTCTTTCACTCTCT 888 Query 4510 -CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAA 4568 || || | || | | || | || | |||| | | |||| || ||| || ||| Sbjct 889 GCTCTA-ACGGATAGTGTAGCAGGTGTTTGAACATCAGGTAGGCAACATTACAGTGTAAA 947 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 | || ||||||||||||||||| || ||||| || | || ||||| | | || | Sbjct 948 CTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCAGTCTTCGTTCC 1007 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| ||||| ||||| || |||| |||||| || |||||||| || ||||| Sbjct 1008 TTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTCTACTGCTGCAAAA 1067 Query 4689 GCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 ||||| | || || | | ||| ||||||| |||||| || ||||| | Sbjct 1068 GCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGCAAGGCCCAATC 1127 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA---TTTACTTTTTTC 4804 || || ||||| || || || || || | || || | || || || |||| || Sbjct 1128 TGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAAAATTCCCTTTCTT- 1186 Query 4805 AAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 ||| |||| ||| |||||||| || || | ||||||||||||||| |||| |||| Sbjct 1187 ---TGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGTATGTTTT 1243 Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923 | || ||||| || || || || || || | |||||||| | |||||||| | | || Sbjct 1244 CCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACTTCTTGGCTAA 1303 Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 ||| || || | |||||| ||||| || || |||| ||| |||| || |||| ||||| Sbjct 1304 ATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAGCCAGAACAT 1363 Query 4984 GAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 | ||||| | || || | |||||| || || |||||| Sbjct 1364 GGGATATGTAATATCCCTCCTTAGGCTTCAGGGCTTCCCAGTG 1406 >seq749787 Length=1786 Score = 118 bits (130), Expect = 9e-22 Identities = 213/304 (70%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || || || || ||||| || || | ||||| ||||| || ||| || |||| Sbjct 1659 AGCCCTTGTGAAGACTGACATTCAGATAGCTCTTCCTTCTGGGTGTTATGGAAGAGTAGC 1600 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||| | || || || || ||||| |||||| Sbjct 1599 TCCATGTTCTGGCTTGGCTGCAAAACACTTCGTAGATGTAGGAGCTGGTGTCATAGATGA 1540 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| | ||||||||||| |||||| | | || Sbjct 1539 AGATTATAGAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 1481 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | ||||||| || || | | || || || ||||| ||| ||| || |||| Sbjct 1480 T-TAAAAAA-GGTGACCGAATTGCACAGCTCATTTGTGAACGAATTTTTTACCCAGAAAT 1423 Query 32002 AGAAGTAGCTAATTATCTAGATTGCAC-GAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 ||||| || | | | | ||| ||| ||| || || | |||| ||||| ||||| | Sbjct 1422 AGAAGAAGTTCAAGGTTTGGATGACACTGAACAG-GGTTCAGAAGGTTTTGGTTCTACTG 1364 Query 32061 Gaaa 32064 |||| Sbjct 1363 GAAA 1360 >seq339167 Length=3377 Score = 116 bits (128), Expect = 3e-21 Identities = 162/224 (72%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || || || || ||||| || || | ||||| ||||| || ||| || |||| Sbjct 1045 GCCCTCGTGAAGACTGACATTCAGATAGCTCTTCCTTCTGGGTGTTATGGAAGAGAAGCT 986 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || ||||| ||||| | |||||||| || || || || || ||||| |||||| | Sbjct 985 CCACTTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAA 926 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942 || ||||||||||| ||||| |||| | ||||||||||| |||||| || | ||| Sbjct 925 GATTATAGAGGAAATGTTGGTGTTGTACTCTTTAATTTTGGCAAAGAAAAGTC-TGAAGT 867 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAAT 31986 ||||||||| || | || || || ||||| ||| |||| Sbjct 866 -TAAAAAAGGTGACCAGAATTGCACAGCTCATTTGTGAACAAAT 824 >seq436660 Length=1326 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 109 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 168 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | |||||||||| |||||||| | | ||||| Sbjct 169 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTCTTGGCTAAATC 223 >seq434942 Length=2636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/151 (74%), Gaps = 7/151 (5%) Strand=Plus/Plus Query 31785 TTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAG 31844 |||| || || | ||| | ||||| || ||| || ||||||| || ||||| ||||| | Sbjct 453 TTCAGATAGCTCTTCCTCCTGGGTGTTAGGGAAGAGTAGCTCCAAGTTCTGGCTTGGCTG 512 Query 31845 TTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTG 31904 |||||||| || || || || || ||||| || || || |||||||| || |||| Sbjct 513 CAAAACACTTCATAGATGTAGGAGCTGGTGTCAT-GA---AGGTTATAGAGGCAATGTTG 568 Query 31905 GAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 | |||| ||||||||||||| |||||| Sbjct 569 GTGTTGTACTGTTTAATTTTGGCAAAGAAAA 599 >seq59382 Length=1206 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 767 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 826 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 827 ATAAAATCAAAGGGATT 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422672443824998