Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq345281 134 1e-26 seq732468 104 2e-17 >seq345281 Length=2749 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2634 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2575 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||||||||| || || ||||| ||||| Sbjct 2574 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2515 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 2514 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAG 2471 >seq732468 Length=3300 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||| ||||| ||||| || || || || |||| ||| || |||| Sbjct 2557 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2498 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | ||| ||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 2497 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2438 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || || |||| ||||||||| || Sbjct 2437 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365719839650786