Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq382080 172 6e-38 seq150772 104 2e-17 seq517911 102 8e-17 seq177720 96.9 4e-15 seq315219 84.2 2e-11 >seq382080 Length=1803 Score = 172 bits (190), Expect = 6e-38 Identities = 495/748 (66%), Gaps = 15/748 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 |||||| ||||| | ||||| || || || | |||| || || || || ||||| || | Sbjct 623 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 681 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGA-AGTATTATATACAGCTTTACAT 23322 | | | | ||||| |||||||| ||||||||||| | | | | | || | || || Sbjct 682 CCAGTAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAA-ACCTCGCTAAAT 740 Query 23323 GATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 | |||| | ||| |||| || ||||| ||||| || || |||||| | || Sbjct 741 CCCAGTTCCAGCATAAGTCTATTGGCCACAAACTCAATGTACTGCTTCATCAAG-CGCAG 799 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAAAC 23441 || || | || || || || || | || || | ||| | | || || | || Sbjct 800 TTCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGAC 859 Query 23442 AGCATCTTTAATTATTTGAACAATAACT-TCTTCACTAGGTGGATATTTTAAA---TACT 23497 ||||| |||| |||| | | ||| ||| | ||| ||||| | || | | Sbjct 860 AGCATTGATAATGATTT---CTTTCACTCTCTGCTCTAAC-GGATAGTGTAGCAGGTGTT 915 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | |||| | | |||| || ||| |||| | ||||| || ||||||| |||||| | Sbjct 916 TGAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGG 975 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||| | || ||||| | || ||||| || | ||| ||||| ||||| || | Sbjct 976 AAAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGC 1035 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | | |||||| || || || || || ||||| || ||| |||| ||| | || || | Sbjct 1036 CAGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCT 1095 Query 23678 TATAA-TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 | || |||||| | ||||| |||||| || ||||| || ||| Sbjct 1096 CCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTT 1155 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | |||| ||| |||||| |||| | || || || ||||| || Sbjct 1156 TCAATGGCACTGAAGAAAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGG 1215 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 |||||||||||||||||| | || ||||| || ||||| || || ||||| ||||| | Sbjct 1216 AAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGG 1275 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | ||||| || | ||||| | | | ||||| || || || ||| Sbjct 1276 GCTTCTGTAATGTGAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 1335 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACAT 23944 |||| || |||||||||| ||||||| Sbjct 1336 TCACATGCTACAAAGAAAGCCAGAACAT 1363 >seq150772 Length=1282 Score = 104 bits (114), Expect = 2e-17 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8480 CTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAA 8539 ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct 67 CTAATTTTTGTTTTTTTCGTAGAGAGGGGGTTTCACCATGTTGGCCACGCTGGTCTCGAA 8 Query 8540 CTCCTGA 8546 ||||||| Sbjct 7 CTCCTGA 1 >seq517911 Length=2699 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || || || | |||||| ||||| || | ||| ||||| | |||| || || Sbjct 1250 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 1309 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||||| Sbjct 1310 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1369 Query 23653 ACAA 23656 |||| Sbjct 1370 ACAA 1373 >seq177720 Length=824 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 8357 CCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCA 8416 ||| || | |||||| |||| ||| | |||||| ||||||||| |||| ||| ||| Sbjct 226 CCCTGGGTAGAGTGCCATGGC---ATCACAGCTCACAGCAACCTCCAACTCCTGGGCTCA 282 Query 8417 AGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCC 8476 ||| | |||||||||||||||||| ||||| | ||| ||||||| ||||| ||||| Sbjct 283 AGCAAGTCTCCTGCCTCAGCCTCCCAAGTAGGTAGGACTACAGGCGCCCGCCACAACGCC 342 Query 8477 AAGCTAATTTTTGT 8490 || | |||| || Sbjct 343 TGGCCATTTTTGGT 356 >seq315219 Length=10413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 12/123 (10%) Strand=Plus/Plus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||| | ||||| |||||| | ||| ||||||||||| ||||||||| ||||||||| Sbjct 2156 TTTTTCTTTTTTT--TAGAGACAAGGTCTCACCATGTTGCCCAGGCTGGCCTCGAACTC- 2212 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 |||||| |||||||| |||||| | |||||||| ||||||| ||| Sbjct 2213 ---------ATGATCCTCCTGCCTCAGCCTCCTGAGTAATTGGGATTATAGGCATGTGCC 2263 Query 8604 ACC 8606 ||| Sbjct 2264 ACC 2266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516005818288400