Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq727490 152 7e-32 seq837635 91.5 2e-13 seq537806 91.5 2e-13 >seq727490 Length=5811 Score = 152 bits (168), Expect = 7e-32 Identities = 224/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 8269 GAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 ||||| |||| |||| | ||| | | || ||||| ||||| ||||| | |||| Sbjct 2728 GAGCTGTGCATCCTGAACGCTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTGCAGAT 2787 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 ||||||||||| | || | |||| ||| || || || ||||| ||||||||||| Sbjct 2788 GAGAGACTGAATGGAGGCTGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAGGTGCT 2847 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||||| | || || ||||| || |||| || ||||| | |||||| || Sbjct 2848 GGGCTTCCAGTACTCAGGAGAACAGATAGGATTACCCATCAGTCCTTTCAAGGAGAATGG 2907 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 || || | || | ||| ||||||| |||||||||| || || ||||||||||||| Sbjct 2908 CGCTCCAAGTTCTACCATGGTCTCACCAAAGATGGCGTCTGGGCGTGGCTTTTCCACCAG 2967 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8568 | | | |||||||||| || || | ||| || || || || | || | || Sbjct 2968 CAGGGCTGGATACAGCTCCATGGCATCAATGTCACCATACAGTGCTTCCAACTCCGTGGC 3027 Query 8569 GATCTCCTTTTCTCCTG 8585 || ||||| ||||||| Sbjct 3028 CATTTCCTTCTCTCCTG 3044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 || |||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||| Sbjct 5608 CTCACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCCGTCTTGAAA 5667 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || ||||| || || |||| || | |||||| | || ||||| || ||||| Sbjct 5668 AACTGATGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCTTGAGGATCA 5727 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | || || ||||||||||| Sbjct 5728 GGGATGAACTTTCTTCTCAGCAGGAATTTTTCCACAA 5764 >seq837635 Length=17697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || || |||||||| || ||||||||| ||| || || Sbjct 16149 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 16208 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 16209 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCGCGCAGCCAGAGTGTGGCATAGAGC 16268 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | || ||||| |||| || || ||||||| Sbjct 16269 ATGAGCCCAGGAAGTAGCCCAAACACCTCCTGGCCCACAGCCA 16311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| || || | || || || ||||| |||||||||||| |||| || Sbjct 8336 TTGACAATGTTGAAGCCAACCTTGCCACCAAATGTGCTTGGCTTCCAGTACTCCGGAGAA 8395 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || | | || || || || || || ||||| || | ||| | || ||| Sbjct 8396 CAGATGGGATTTCCTAGAAGACCCTTAAGAGAAAAGGGAGCACCAATCTCTATCATACTC 8455 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||| | ||| || || |||||| | | || || | ||| | ||||| Sbjct 8456 TCCCCAAAGATAGAGTTTGGTTGGCACTTTTCGAGAAGCAACCCTGGGTAGAACTCCAAG 8515 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || | || | || || || ||||| || |||||| Sbjct 8516 GCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCTTTCTCTCCT 8569 >seq537806 Length=10837 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || || ||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 1027 CTCACGCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 1084 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||||||||| | Sbjct 1085 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGGGGT 1144 Query 9768 CGGGAGTGAAGGTCCTCC 9785 |||| |||| |||||| Sbjct 1145 CGGGTATGAACTTCCTCC 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709340578874240