Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq41684 96.9 7e-15 seq263 91.5 3e-13 seq40807 89.7 1e-12 seq616 89.7 1e-12 >seq41684 Length=683795 Score = 96.9 bits (106), Expect = 7e-15 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 165695 GGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTG 165754 ||||| | ||| ||||||| ||||||||||||||||||| ||||| ||||||| | Sbjct 329657 GGACTGACAAC--TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG 329600 Query 165755 GTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||| ||||| Sbjct 329599 GTCGTGGGTTCGAGCCCCACGTTGGGC 329573 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 165695 GGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTG 165754 || ||| | | || |||||| ||||||||||||||||||| ||||| ||||||| | Sbjct 5679 GGTCTTTACAGGCGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG 5738 Query 165755 GTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||| ||||| Sbjct 5739 GTCGTGGGTTCGAGCCCCACGTTGGGC 5765 Score = 95.1 bits (104), Expect = 3e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 || ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 339380 CGGTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 339439 Query 165765 CGAGCCCCACGATGGGC 165781 ||||||||||| ||||| Sbjct 339440 CGAGCCCCACGTTGGGC 339456 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 324541 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 324482 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 324481 CCCACGTTGGGC 324470 >seq263 Length=2028832 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 534354 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 534295 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 534294 CCCCACGTTGGGC 534282 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 527583 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 527642 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 527643 CCCACGTTGGGC 527654 >seq40807 Length=1500189 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 727223 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 727282 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 727283 CCCACGTTGGGC 727294 >seq616 Length=1288825 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 148142 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 148083 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 148082 CCCACGTTGGGC 148071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057136166472500