Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq598 154 1e-32 seq388 96.9 3e-15 >seq598 Length=3788045 Score = 154 bits (170), Expect = 1e-32 Identities = 384/580 (66%), Gaps = 15/580 (3%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||| | || || |||| ||||||||||||||||||||||| || ||||| ||| | Sbjct 455748 GGTGACTTGGGTCCTGTTTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAAA- 455690 Query 18849 TGTCAAT-CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 | | ||| || |||||| |||| | | || || ||||||| || || || || || Sbjct 455689 TATGAATTCAGACTATTCTGGGCAAAAAGTAGACCAACTGCAAAAAGTGATTGACACTAT 455630 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 ||| | || || || | || || | || | | ||||||||||||| | | |||| Sbjct 455629 CAAAGCCAATCCTGACGACAGAAGACTCATCACCTGTGCTTGGAATCCAAAAGCTCTCCC 455570 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 | |||| | |||||| | ||| || | || ||||| | ||| | |||| || | Sbjct 455569 TCTGATGGCGCAGCCTCCAGGCCACGCGCTCTGCCAGTTCTGCGTGGTGGACGGCGAGCT 455510 Query 19028 ATCCTGCCAAGTATA-----------CCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076 |||||||| | || | ||| ||||| || ||| ||| || || Sbjct 455509 GTCCTGCCAGCTCTATCGGACGGAGGTCGGAGGTCGGGAGACGTGGTCCTGGGCACGCCT 455450 Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 ||||||||||| | ||||| | || || || || | || || | |||| |||| Sbjct 455449 TTCAACATTGCCAGCTATGCCCCGCTCACGTATATGATTGCACACATCACAGACCTTAGG 455390 Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT-ATAGATGC 19195 | || || || | ||||| |||| || |||||| |||| |||||||| || | Sbjct 455389 CCAGGTGACTTTGTACATACTTTGGGAGACCCACATAGTTACCTGAATCATGGCTGAGCC 455330 Query 19196 TTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAA 19255 ||| | ||||| || |||| ||||||||| || || ||| ||||||| Sbjct 455329 ACCGAAAATTCAGCTTCAGAGAGAACCAAGACCTTTTCCGAAGCTCAACATTCTTCGAAA 455270 Query 19256 TGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACA 19315 || | || | || || ||| || || |||||| | || ||||| |||||||| Sbjct 455269 AGTTGAGAAAATTGATGATTTCAAACCTGAAGACTTTCAGGTCGAAGGATACAATCCACA 455210 Query 19316 -ccccccccTAAAAATGGAAATGGCTCTTTAATGGATTTT 19354 | | |||||||||||||||||||||| | ||||| Sbjct 455209 TCTGACTATTAAAAATGGAAATGGCTCTTTAGAGTATTTT 455170 >seq388 Length=3990105 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| | |||| || |||||||| || || | || ||||| ||||| | | Sbjct 2997300 GATCTCCCTCTGATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGAT 2997359 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||||| | |||||||| | |||||||| || || || |||||||| || || || ||| Sbjct 2997360 GGTGAGCTGTCCTGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTC 2997419 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | ||||| || || || || || | || || | ||||| ||||| Sbjct 2997420 AACATTGCCAGCTATGCCCTGCTCACGTATATGATTGCACACATCACAGGCCTTAA 2997475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399256900533750