Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq48489 255 7e-63 seq721 183 4e-41 seq388 150 2e-31 seq598 102 1e-16 >seq48489 Length=859937 Score = 255 bits (282), Expect = 7e-63 Identities = 524/764 (69%), Gaps = 25/764 (3%) Strand=Plus/Plus Query 9569 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 9628 |||| | ||| | ||| |||| || || ||| |||| || || || ||| | ||||| | Sbjct 623686 ACATCTACCTGCTCAACCTGGCCATCTCCGACCTGCTCTTCCTGTTCACTCTCCCATTCT 623745 Query 9629 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 9688 |||| || || ||| || ||||| ||| || || || |||| || |||| Sbjct 623746 GGATCTACCATGTTGC---GTGGCATGACTGGGTGTTCGGGGACGCCATGTGCAAGCTGC 623802 Query 9689 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 9748 | ||| | | |||| | ||||| || || |||| | |||||||||||| || | Sbjct 623803 TTTCGGGGCTCTACGACATAGCCTTGTACGGCGAGATCTTCTTCATCATCCTGCTGACGG 623862 Query 9749 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 9808 | |||||||| || || | || | || || ||| || || | || || |||| Sbjct 623863 TCGACAGGTACCTGGCCATCGTGCACGCCGTGTTTGCCCTGCGGGCCCGGACCGTCACCT 623922 Query 9809 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCCTGAA 9867 ||||| || || | || |||||| ||||||| | | | || ||||||| ||| Sbjct 623923 TCGGCATCGTCTCCAGCGTCGTCACCTGGGGCCTGGCAGTGCTAGCTG-CCCTCCCCGAA 623981 Query 9868 TTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCA 9927 ||| |||| | | || |||| ||| || || || | ||| | ||||| Sbjct 623982 TTTGTCTTCCGGGAGTCCCCGGATG-----GGTTGG--TC--TGCAACCCTCAGTACCCG 624032 Query 9928 GAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGG-TGATTATGTTAAGTCT 9986 ||| | | | |||| |||| |||||| || ||| ||| ||| | || || Sbjct 624033 GAGGAGGGGGAAGAGAGCTGGAAGCGCTTCCACGT-GCTGAGGATGAATATCCTGAGCCT 624091 Query 9987 CATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAG 10046 | | ||||||||| | ||||| || ||||||| | || |||| || ||| |||| Sbjct 624092 CGCCCTCCCTCTGCTCGTGATGGCCGTGTGCTACTCAGGCATCATCAAAACGCTGCTGAG 624151 Query 10047 GCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTA 10106 | ||||||| || |||||| ||||||||||| || ||||||| ||||||||||||||||| Sbjct 624152 GTGCCCCAGTAAAAAGAAGGACAAGGCCATCCGGGTCATCTTCGTCATCATGGTGGCCTA 624211 Query 10107 TTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT 10166 |||||| || ||||||||||||||| | || || || | || || || | ||| | Sbjct 624212 TTTTGTCTTCTGGACACCCTACAACGTGACGCTTCTCCTCTACACTTTCCAAACGACCTT 624271 Query 10167 --TCTT-AAC--CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACA 10221 |||| || | || ||||||| || ||| | ||||| |||| |||||| | || Sbjct 624272 GGTCTTCGACGACAGCTGTGTGCA--GAACAGGCGCCTGGACGTGGCGCTGCTGGTGACC 624329 Query 10222 AAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAG 10281 | | || |||||| ||||| ||||||||||| ||||||||||| |||||||| ||| Sbjct 624330 GAGATGGTCTCCTACATGCACTGCTGCATCAACCCGGTGATCTACGCCTTCGTGGGAGAG 624389 Query 10282 AAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG 10324 ||||| |||||| |||| || ||| |||| || |||||| Sbjct 624390 AAGTTCCAGAAGA-GCCTGCGCCGCTTTTTCCGCAGGCACGTGG 624432 Score = 255 bits (282), Expect = 7e-63 Identities = 524/764 (69%), Gaps = 25/764 (3%) Strand=Plus/Plus Query 176455 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 176514 |||| | ||| | ||| |||| || || ||| |||| || || || ||| | ||||| | Sbjct 623686 ACATCTACCTGCTCAACCTGGCCATCTCCGACCTGCTCTTCCTGTTCACTCTCCCATTCT 623745 Query 176515 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 176574 |||| || || ||| || ||||| ||| || || || |||| || |||| Sbjct 623746 GGATCTACCATGTTGC---GTGGCATGACTGGGTGTTCGGGGACGCCATGTGCAAGCTGC 623802 Query 176575 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 176634 | ||| | | |||| | ||||| || || |||| | |||||||||||| || | Sbjct 623803 TTTCGGGGCTCTACGACATAGCCTTGTACGGCGAGATCTTCTTCATCATCCTGCTGACGG 623862 Query 176635 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 176694 | |||||||| || || | || | || || ||| || || | || || |||| Sbjct 623863 TCGACAGGTACCTGGCCATCGTGCACGCCGTGTTTGCCCTGCGGGCCCGGACCGTCACCT 623922 Query 176695 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCCTGAA 176753 ||||| || || | || |||||| ||||||| | | | || ||||||| ||| Sbjct 623923 TCGGCATCGTCTCCAGCGTCGTCACCTGGGGCCTGGCAGTGCTAGCTG-CCCTCCCCGAA 623981 Query 176754 TTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCA 176813 ||| |||| | | || |||| ||| || || || | ||| | ||||| Sbjct 623982 TTTGTCTTCCGGGAGTCCCCGGATG-----GGTTGG--TC--TGCAACCCTCAGTACCCG 624032 Query 176814 GAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGG-TGATTATGTTAAGTCT 176872 ||| | | | |||| |||| |||||| || ||| ||| ||| | || || Sbjct 624033 GAGGAGGGGGAAGAGAGCTGGAAGCGCTTCCACGT-GCTGAGGATGAATATCCTGAGCCT 624091 Query 176873 CATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAG 176932 | | ||||||||| | ||||| || ||||||| | || |||| || ||| |||| Sbjct 624092 CGCCCTCCCTCTGCTCGTGATGGCCGTGTGCTACTCAGGCATCATCAAAACGCTGCTGAG 624151 Query 176933 GCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTA 176992 | ||||||| || |||||| ||||||||||| || ||||||| ||||||||||||||||| Sbjct 624152 GTGCCCCAGTAAAAAGAAGGACAAGGCCATCCGGGTCATCTTCGTCATCATGGTGGCCTA 624211 Query 176993 TTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT 177052 |||||| || ||||||||||||||| | || || || | || || || | ||| | Sbjct 624212 TTTTGTCTTCTGGACACCCTACAACGTGACGCTTCTCCTCTACACTTTCCAAACGACCTT 624271 Query 177053 --TCTT-AAC--CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACA 177107 |||| || | || ||||||| || ||| | ||||| |||| |||||| | || Sbjct 624272 GGTCTTCGACGACAGCTGTGTGCA--GAACAGGCGCCTGGACGTGGCGCTGCTGGTGACC 624329 Query 177108 AAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAG 177167 | | || |||||| ||||| ||||||||||| ||||||||||| |||||||| ||| Sbjct 624330 GAGATGGTCTCCTACATGCACTGCTGCATCAACCCGGTGATCTACGCCTTCGTGGGAGAG 624389 Query 177168 AAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG 177210 ||||| |||||| |||| || ||| |||| || |||||| Sbjct 624390 AAGTTCCAGAAGA-GCCTGCGCCGCTTTTTCCGCAGGCACGTGG 624432 >seq721 Length=8920270 Score = 183 bits (202), Expect = 4e-41 Identities = 135/157 (86%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||||| || |||||| || || |||||||||||||| |||||||| | ||| Sbjct 5232466 CAGCGCCGCAGCCGCAACCTGAGCGTCTTCAGCTTTTCCCCCAGAGAGTTCACGTGCTCC 5232525 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || | ||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5232526 TTGAC---GTCTGGGCTGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 5232582 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 5232583 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 5232619 Score = 114 bits (126), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 137929 TTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATG 137988 || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 5230197 TTGATCTTCGTTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTCATG 5230256 Query 137989 GCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 || |||||||| ||||| || ||||||| Sbjct 5230257 GCTTTGTAGACACCTTTCTCTTGGAGCT 5230284 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 138022 AAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAATCTGTG 138080 ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||| Sbjct 5231430 AAGGCGCTCTTCACCTGCTCCACAGCCTTGCTCTTGTTCTCACAGGGGAGGAATCGGTG 5231488 >seq388 Length=3990105 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||| || || ||||||| |||||||| |||||||||||| Sbjct 2997472 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2997413 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||| ||||||||||| ||||| || || || Sbjct 2997412 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2997353 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| || ||||| || ||||| ||||| Sbjct 2997352 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCAT 2997312 >seq598 Length=3788045 Score = 102 bits (112), Expect = 1e-16 Identities = 368/574 (64%), Gaps = 30/574 (5%) Strand=Plus/Plus Query 145735 AAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTG 145794 ||||| || ||| ||| | |||| ||| || | ||| || || ||| ||| |||||| Sbjct 455379 AAGTCACCTGGCCTAAGGTCTGTGATGTGTGCAATCATATACGTGAGCGGGGCATAGCTG 455438 Query 145795 GCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG-----------TACA 145843 || |||||||| ||| ||||| ||| ||| ||||| | | | || | Sbjct 455439 GCAATGTTGAAAGGCGTGCCCAGGACCACGTCTCCCGACCTCCGACCTCCGTCCGATAGA 455498 Query 145844 GCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCA 145903 |||||||||| ||||| ||| || ||||| |||||||||| || ||||| || ||| Sbjct 455499 GCTGGCAGGACAGCTCGCCGTCCACCACGCAGAACTGGCAGAGCGCGTGGCCTGGAGGCT 455558 Query 145904 GGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGG 145963 | ||||| || || | || ||||| || | || ||| || ||| || | Sbjct 455559 GCGCCATCAGAGGGAGAGCTTTTGGATTCCAAGCACAGGTGATGAGTCTTCTGTCGTCAG 455618 Query 145964 GGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAAT 146023 | || ||||| | |||| | || ||||| || ||||| || | Sbjct 455619 GATTGGCTTTGATAGTGTCAATCACTTTTTGCAGTTGGTCTACTTTTTGCCCAGAATAGT 455678 Query 146024 CTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCC 146083 ||| || | ||| | ||||| || || ||||||||||| || || || || | Sbjct 455679 CTGAATTCATATTTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGAC 455738 Query 146084 CCAGGTCCCCGGGCTCCCT-GTG-----CCCCAGCCCGGCC-------CGGGCGA----G 146126 ||| ||| || || || ||| ||||| | | || | | || Sbjct 455739 CCAAGTCACCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCCTGAGATCATT 455798 Query 146127 GAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGA 146186 | || |||| || | ||| | |||||||| || || ||| | | || || | ||| | Sbjct 455799 GTAGCCCCGAGA-TCATTGTCATCCCAGATTTTCACTCCCTTAGAAGATAGTTTATTAGC 455857 Query 146187 GTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCT 146246 || ||||| ||| |||| ||||| |||| |||||| | |||||| ||||||| || | Sbjct 455858 GTTTGTGGATCCCTTGATAAACCAAAGCAACTCTTCCAAAACCCCCTTCCAGAATACAC- 455916 Query 146247 CTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGG 146280 ||||| |||||||| || || | | |||||| Sbjct 455917 GTTGGTTGTCAGCAGAGGAAATTCATCTCGCAGG 455950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589702470030000