Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq49606 324 2e-83 seq768 284 1e-71 seq614 118 1e-21 >seq49606 Length=2481848 Score = 324 bits (358), Expect = 2e-83 Identities = 274/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | | |||| | ||||| |||||||||||||| Sbjct 850989 AGCAGGGCTTCGATGTCGGGCTCGATGTCAATGGTCGGAAAGCGGCGGCTGTACCTGCGC 850930 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||||| |||||||| ||||||||| ||||||||||| | |||||||||| Sbjct 850929 ACCGGCACGCCGTCAGGACCCACCAGGAACTTCTCAAAGTTCCAGGCAATGTCGTTGCGG 850870 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| ||||| | ||| ||||| Sbjct 850869 CACACGGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCACAGGGGTCATCGCTG 850810 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||||||||| || ||||| || ||||||||||||||| | || || || ||| Sbjct 850809 GGCGCCGGCAGGGCCTCGCGCAGGAAAGCAAAGAGCGGATGTGCCTTGGCGCCATTCACC 850750 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||| |||||||||| | ||||| |||||||| |||| || || ||||||| ||| Sbjct 850749 TCGCATTTCTCGAAGACTGTGAAGTTGGGCTCGAACCCGTCGCCGGGTCGGACGTACTTG 850690 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||||| || |||||| |||||| |||||| |||| Sbjct 850689 AGGGAGTTCAGGATCTCTTCATTCTTGGCGTTCTCCT 850653 Score = 178 bits (196), Expect = 2e-39 Identities = 146/177 (82%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || || || ||||| ||||| | || |||| Sbjct 850427 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACCACCAGGCCCCGGGGCCCGAGGC 850368 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| | Sbjct 850367 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTACCTCAGAGGGACGCCA 850308 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTC 83567 | ||||||||||||| ||| |||||| | | |||| | ||||| || |||||| Sbjct 850307 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCATCGG--CTCCTC 850253 >seq768 Length=2538604 Score = 284 bits (314), Expect = 1e-71 Identities = 366/500 (73%), Gaps = 40/500 (8%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCA-GGGTCTGGCAGCGGTGGCTGT-ACCTGC 83114 |||||| | |||||| |||||| | | | ||||| | ||||| || ||| | |||| Sbjct 198 AGCAGGCCTTCGATG--GGGCTCGATGTGGATGGGTCGGAAAGCGGCGGTTGTTATCTGC 255 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 || ||| |||| | ||||||| ||||||||| | ||||||||| | |||||||| Sbjct 256 GCC--GGCA---CGTCCGGGCCCACCAGGAACTTCTCAACGTTCCAGGCAATGTCGTTGC 310 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| ||||| |||| |||| || ||||||| ||| ||||| || || | ||| Sbjct 311 GGCACACGGGAGATCAGGTGATGAACTTGGGGTCGGTCATGAGCGCACT-GGGTTGGCGC 369 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | ||||||||||||||||| | ||||| || |||||||| |||||| || || || | Sbjct 370 TGGGCGCCGGCAGGGCCTCGAGCAGGAAAGCAAAGAGCGGCTGTGCCTAGGCGCCATTCA 429 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 ||||||| ||||||||| || ||| || || ||||||| || Sbjct 430 CCTCGCATTTCTCGAAG----TA----------------CGTCGCCGGGTCGGACGTACT 469 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACG 83414 | ||||| || |||| | |||| |||||| |||| ||||||||| |||| Sbjct 470 TGAGGGAGTTCAGAATCT--TCGTTCTTGGCGTTCTCCT-------GAACTGGTTGCACG 520 Query 83415 GGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAG 83474 |||| || ||||| ||||| ||||| | ||| |||||| ||||||||| ||||||||| | Sbjct 521 GGAAGCCGAGCACCACCAGGCCCCG-GGTCCCAGGCGCAGCTGCAGCTTGTTCATCTGGG 579 Query 83475 TGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGC 83534 |||| || |||||||| | ||||||||||| || || ||||||||||||| ||| || Sbjct 580 TGTAGTCGTGGACCGTGGTGCCTCAGAGGGAGGCCACATTCTCGATGAGCAGCACCTTGC 639 Query 83535 CCCGTAAGAAGCCTAAGCTC 83554 || | | | |||| | |||| Sbjct 640 CCGGCAGGGAGCCCAGGCTC 659 >seq614 Length=11208981 Score = 118 bits (130), Expect = 1e-21 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || || ||| Sbjct 2543734 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTTGCCTCCCGCCTGC 2543676 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| ||| |||||||||| || || | ||||||| Sbjct 2543675 TGGTGCACCTCTTCCCCGAGCTCTTCACTCACGAGAACCTGCGCAAACAGTACAACTGCA 2543616 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | || |||| ||||| Sbjct 2543615 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCAGCCCGCATTAAGCTGATCCGCCACTAC 2543557 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGA-TCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| ||||| || || |||| || | | |||| ||| Sbjct 2543556 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGTGTCTGGACTCTCGA-GTTCGTGGG 2543498 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 2543497 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 2543452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608410594530000