Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq133 91.5 3e-13 >seq133 Length=10473765 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| || || ||||| ||||||||| | || || || Sbjct 3211603 GCATTTTTTGGAGCCCAGATGAATTCCTTCATACATGTGATTATGTACTCATACTACGGG 3211544 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 || | || | ||| || ||| ||||||| ||| || ||||||||||| || || || | Sbjct 3211543 TTGACTGCCTTTGGCCC-ATGGATTCAGAA-GTACCTTTGGTGGAAACGATACCTGACCA 3211486 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 3211485 TGTTGCAGCTGGT 3211473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922611147030000