Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq309 111 2e-19 seq490 102 9e-17 seq460 102 9e-17 seq104 102 9e-17 seq40807 100 3e-16 seq40042 100 3e-16 seq398 100 3e-16 seq42965 98.7 1e-15 seq502 98.7 1e-15 seq86 91.5 2e-13 seq741 87.8 2e-12 seq81 86.0 7e-12 seq50 84.2 2e-11 >seq309 Length=2273895 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | | ||| ||||| ||||| ||| ||| || || || ||||| |||| | Sbjct 961387 CCACCTCCCAGATGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 961328 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || || ||||| || ||||||||||||| || Sbjct 961327 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGG 961268 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || |||||| |||||| | | || | | || || || | || | Sbjct 961267 ATGCCCTACTTGTCTTGGATTTTGGCCGTCACATTCTCTATGGTATCCCTGGGCTCAGCC 961208 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| |||||||| |||||||| || ||||| || ||||| ||||| ||| Sbjct 961207 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTT 961157 >seq490 Length=542777 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 29873 TCTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 29814 Query 60125 ATACTACCGAGGAT 60138 |||||| |||||| Sbjct 29813 ATACTAATGAGGAT 29800 >seq460 Length=2238155 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | || || ||||| ||||| ||| ||| | || || ||||| |||| Sbjct 439795 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 439736 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || ||||| || || || ||||| || ||||||||||||| | Sbjct 439735 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTGAG 439676 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| | |||| |||| || | | ||||| || | || || Sbjct 439675 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 439616 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||| |||||||| ||||| || || ||||| | ||||| ||||| ||| || Sbjct 439615 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTTTGCG 439562 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | | ||| ||||| ||||| ||| ||| || || ||||| |||| Sbjct 439074 CCGCCTCGCAGATGCAGCACCAGATGCAGGGTGGACTC----TGGATGTTGTATTCAGAG 439019 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || ||||| || || || ||||| | ||||||||||||| | Sbjct 439018 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAAGCGCTGCTGGTCGGGTGAG 438959 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| | |||| |||| || | | ||||| || | || || Sbjct 438958 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 438899 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||| |||||||| ||||| || || ||||| | ||||| ||||| ||| || Sbjct 438898 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTTTGCG 438845 >seq104 Length=6237175 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 31630 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 31571 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 31570 ATACTAACGAGGAT 31557 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 48325 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 48266 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 48265 TACTAACGAGGA 48254 >seq40807 Length=1500189 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 927275 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 927216 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 927215 TACTAACGAGGAT 927203 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 930383 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 930324 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 930323 TACTAACGAGGA 930312 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||| |||||| ||||||| |||||||||| || ||||||||||||| Sbjct 959840 CTCCCCGTCAGGGAATTGAACCCCGGTCTCCTGCGTGACAGGTGGGGATACTCACCACTA 959899 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 959900 TACTAACGAGGA 959911 >seq40042 Length=288415 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 97074 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97015 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 97014 TACTAACGAGGAT 97002 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 118490 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 118431 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 118430 TACTAACGAGGAT 118418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3868 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3927 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3928 TACTAACGAGGA 3939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 81258 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 81199 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 81198 ATACTAACGAGGAT 81185 >seq398 Length=3125954 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 189009 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 188950 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 188949 ATACTAACGAGGA 188937 >seq42965 Length=562198 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 314168 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 314227 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 314228 TACTAACGAGGA 314239 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 317334 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 317393 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 317394 TACTAACGAGGA 317405 >seq502 Length=8891789 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8082411 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8082352 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8082351 TACTAACGAGGA 8082340 >seq86 Length=11366711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1785308 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1785249 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1785248 ATACTAACGAGGA 1785236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| | |||||||||||||||| || ||||||||||||| Sbjct 8122702 CTCCCCGTCCGGGAATCGAACCCCGCTCTCCCGCGTGACAGGAGGGGATACTCACCACTA 8122761 Query 60126 TACTACCGAGGAT 60138 ||| | ||||||| Sbjct 8122762 TACAAACGAGGAT 8122774 >seq741 Length=3422296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||| ||||| |||||||||| |||||||||| |||||||||||||||||| |||| Sbjct 1087108 GGGAATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTATACTAACGAG 1087167 Query 60136 GAT 60138 ||| Sbjct 1087168 GAT 1087170 >seq81 Length=2764109 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||||||| | | ||||| || ||||||| ||||| Sbjct 1089094 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCACATTACAGGTGGGGATACTCATCACTA 1089035 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1089034 TACTAACGAGGA 1089023 >seq50 Length=2506936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 42960 CCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGA 43019 |||| | ||||| ||||| || | ||| ||| || || || ||||| |||| ||| Sbjct 1731579 CCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGC 1731520 Query 43020 GTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACG 43079 || || | || || ||||| || || || ||||| || ||||||||||| | || | | Sbjct 1731519 GTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGGGGGATG 1731460 Query 43080 CTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCG 43139 | || |||||| |||||| |||| || | | || || || | || || ||| Sbjct 1731459 CCCTTCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCGACCTCG 1731400 Query 43140 ACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTG 43180 | | ||| | |||||||| || ||||| | ||||| || Sbjct 1731399 AGGGAGATTTTCTTGCCCGTCAGGGTCTTCATGAAGATCTG 1731359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571454853210000