Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq44217 95.1 2e-14 seq44605 89.7 8e-13 seq688 89.7 8e-13 seq295 89.7 8e-13 seq231 89.7 8e-13 seq766 86.0 9e-12 seq598 86.0 9e-12 seq432 86.0 9e-12 seq338 86.0 9e-12 seq47707 84.2 3e-11 seq418 84.2 3e-11 >seq44217 Length=341162 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||||||| | |||| || ||| ||| | || Sbjct 123030 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCAAAACACTTCG 123089 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || || ||| Sbjct 123090 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTAT 123149 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | | || | ||| || |||| | || | || | Sbjct 123150 TTAATTTTGGCAAAGAAAAGTTTGAAGTTAAAAAAGGTGACCGAATTGCACAGCTCATTT 123209 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| |||||| || || |||| Sbjct 123210 GTGAACGAATTTTTTACCCAGAAAT 123234 >seq44605 Length=175201 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||||| || | ||| | || || ||||| || || || || Sbjct 1685 CCACCACGAAGTCTTAACACAAGATGAATCGTGGACTCTTTTTGGATGTTGTAGTC---- 1740 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || || |||| ||||||||||||| |||||||||||| |||||| Sbjct 1741 AAAGTACGCCCATCTTCCAACTGTTAGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1800 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 1801 ATTCCTTCCTTATCCTG 1817 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| ||||||||| || | ||| | || || || || || || || || || Sbjct 630 CCACCATGAAGTCTTAACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAC 689 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | ||| || || ||||| ||||||||||||| |||||||||||| |||||| Sbjct 690 AAAGTATGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGA 749 Query 146171 ATTCCTTCTTTA 146182 |||||||| ||| Sbjct 750 ATTCCTTCCTTA 761 >seq688 Length=8023630 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| |||||| || || | ||| || || || || || || || || || || Sbjct 7569086 CCACCATGAAGTCTCAACACAAGATGAAACGTGGAGTCCTTTTGGATGTTGTAGTCAGAC 7569145 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || || || || ||||||||||||| |||||||||||| |||||| Sbjct 7569146 AAAGTACACCCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 7569205 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 7569206 ATTCCTTCCTTATCCTG 7569222 >seq295 Length=1302164 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| || | ||| ||||| |||||||| || ||||||||||||| |||| Sbjct 302622 ATGTTATAATCAGACAAAGTATGCCTATCTTCTAATTGCTTGCCAGCAAAAATCAGTCTT 302681 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||| ||||||||| ||||| |||| || Sbjct 302682 TGCCGATCAGGAGGAATTTCTTCTATATCCTG 302713 >seq231 Length=9897518 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||| |||| | ||| | || || || || || || || || || Sbjct 3122547 CCACCACGAAGTCTTCATACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAC 3122606 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || || ||||| ||||||||||||| |||||||||||| |||||| Sbjct 3122607 AAAGCACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 3122666 Query 146171 ATTCCTTCTTTA 146182 |||||||| ||| Sbjct 3122667 ATTCCTTCCTTA 3122678 >seq766 Length=1455367 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | || || || || || | || || || Sbjct 21523 CCACCACGAAGTCTCAACACAAGATGAAGTGTGGACTCCTTTTGGATGATGTAGTCAGAC 21464 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || || ||||| ||||||||||||| |||||||||| | |||||| Sbjct 21463 AAAGTACACCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGAACAGGAGGA 21404 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 21403 ATTCCTTCCTTATCCTG 21387 >seq598 Length=3788045 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 146053 ACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAG 146112 ||| | |||||| || || | ||| | || ||||| || || || | || || || Sbjct 1806244 ACCACGAAGTCTCAACACAAGATGAAGCGTGGATTCCTTTTGGATGTTGCAGTCAGACAG 1806303 Query 146113 AGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAAT 146172 ||| || | ||| || || || || |||| |||||||| ||||||||| || |||||||| Sbjct 1806304 AGTACTCCCATCTTCCAACTGCTTGCCAGAAAAAATCAGTCTTTGCTGGTCAGGAGGAAT 1806363 Query 146173 TCCTTCTTTATCTTG 146187 |||||| ||||| || Sbjct 1806364 TCCTTCCTTATCCTG 1806378 >seq432 Length=6714211 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || || | ||| | | ||| || || ||||| ||||||||||||| |||| Sbjct 4307112 ATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTT 4307171 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| ||||| || Sbjct 4307172 TGCTGATCAGGAGGAATTCCTTCCTTATCCTG 4307203 >seq338 Length=5205875 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || || | ||| | | ||| || || ||||| ||||||||||||| |||| Sbjct 2398063 ATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTT 2398122 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| ||||| || Sbjct 2398123 TGCTGATCAGGAGGAATTCCTTCCTTATCCTG 2398154 >seq47707 Length=6282480 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| |||||| || || | ||| | || || || || || || ||||| || Sbjct 1043820 CCACCAGGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAC 1043761 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || || || || |||||||||||| |||||||||||| |||||| Sbjct 1043760 AAAGTACGCCCATCTTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1043701 Query 146171 ATTCCTTCTTTATC 146184 |||||||| ||||| Sbjct 1043700 ATTCCTTCCTTATC 1043687 >seq418 Length=10642717 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 || || | ||| || || ||||| ||||||||||||| |||||||||||| ||||||||| Sbjct 2806558 GTACTCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATT 2806617 Query 146174 CCTTCTTTATCTTG 146187 ||||| ||||| || Sbjct 2806618 CCTTCCTTATCCTG 2806631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743054725440000