Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq436 125 5e-24 seq139 104 2e-17 seq309 98.7 6e-16 seq50 98.7 6e-16 seq495 95.1 8e-15 seq460 93.3 3e-14 seq472 86.0 4e-12 seq347 82.4 5e-11 >seq436 Length=2687165 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | |||| |||||||| ||||||||||| || Sbjct 806593 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806652 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| ||||||||| || Sbjct 806653 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 806712 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||| | || | || | || | | ||| || Sbjct 806713 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACC 806772 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| |||||||| ||||||||||||||||| Sbjct 806773 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 806819 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| |||||||| ||||||||||| || || ||| | || Sbjct 806380 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 806439 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| |||||| || || | || || || || Sbjct 806440 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCC 806499 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || || | |||||||| Sbjct 806500 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 806559 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||||||||| Sbjct 806560 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 806591 >seq139 Length=10686148 Score = 104 bits (114), Expect = 2e-17 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | |||||||||||| | || |||||||| |||||| |||| ||| Sbjct 400200 CCGCCTCACAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGCAGTCAGAC 400141 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGC------TGGTCG 34276 ||| ||| | || |||| ||| ||||| || || || || |||||| |||| | Sbjct 400140 AGCATGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTGGTGGTGG 400081 Query 34277 ACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGAT 34336 ||| | || ||||||||| || || ||| | || | || | || | | Sbjct 400080 GGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCCATGGTGTCACTGGCC 400021 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || | |||||||| ||||| || || || ||||| |||||||||||| Sbjct 400020 TCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 399967 >seq309 Length=2273895 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || | || |||||||| ||||||||||| ||||| ||| | || Sbjct 961373 CAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATC 961314 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || || |||||||||||| || | || || |||||| Sbjct 961313 TTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGGATGCCCTACTTGTC 961254 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || | | | || |||| | ||| | | || | || | |||||||| Sbjct 961253 TTGGATTTTGGCCGTCACATTCTCTATGGTATCCCTGGGCTCAGCCTCGAGGGTGATGGT 961194 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 961193 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 961160 >seq50 Length=2506936 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 34165 GCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAG 34224 ||| ||||| | |||||||||||| | || |||||||| ||||||||||| ||||| Sbjct 1731580 GCCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAG 1731521 Query 34225 CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCAC 34284 | ||| | || |||| ||| ||||| || || || || ||||||||||| ||| | Sbjct 1731520 CGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGGGGGAT 1731461 Query 34285 GCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 || || |||||| || || ||| | || | || | ||| | | ||||| || Sbjct 1731460 GCCCTTCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCGACCTC 1731401 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 | | ||| | ||||| || || || |||| |||||||| Sbjct 1731400 GAGGGAGATTTTCTTGCCCGTCAGGGTCTTCATGAAGATCTG 1731359 >seq495 Length=4822262 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||||| |||| | ||||||| || |||||||| || || ||| | || Sbjct 1126875 AGAACCAGGTGTAGAGTAGGTGCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1126816 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||| ||| ||||||||| ||| | || || || || Sbjct 1126815 TCCAGCTGCTTGCCTGCAAAGATGCGCCTCTGCTGGTCAGGGGGTATGCCTTCTTTATCC 1126756 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | ||| | || | || | | || || || | |||||| | Sbjct 1126755 TGGATCTTAGCCTTCACATCCCCAATGGTGTCACTGGGGTCCACCTCTAGGGTGATGCTC 1126696 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | | || |||||||||||||| Sbjct 1126695 TTGCCAGTCAAGGACTTAACAAAGATCTGCAT 1126664 >seq460 Length=2238155 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA- 34221 || || ||||| | ||||||||| || | || ||| |||| ||||||||||| || Sbjct 439795 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 439736 Query 34222 -CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 ||| || ||| | || |||| ||| ||||| || || || || |||||||||||| | Sbjct 439735 ACAG-TG-CGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTG 439678 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTC 34338 | || ||||||||| | ||||| ||| | || | || | || | | || Sbjct 439677 AGATGCCCTCCTTGTC--TTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 439620 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || | |||||||| ||||| || || || |||| |||||||||||| Sbjct 439619 GACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATC 439568 >seq472 Length=1492349 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||| || || | || || || || ||||||||||| ||| Sbjct 1223284 CCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1223225 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||||||| ||||| || ||||| || | ||||| ||| || Sbjct 1223224 AAAGTACGCCCGTCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGGA 1223165 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | ||||| || || ||| || |||| || |||| | ||| | || ||| || Sbjct 1223164 ATTTCTTCCTTATCCTGGAT-TTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAAC 1223106 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || ||||| ||||| || || ||||||||| Sbjct 1223105 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCATC 1223057 >seq347 Length=5549683 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| ||| || || | || || || || ||||||||||| ||| Sbjct 1107941 CCACCACGAAGCCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1107882 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || |||||||||||||| || ||||| || | ||||| || || Sbjct 1107881 AGAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1107822 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | | ||| | || ||| || |||| || |||| | ||| | | ||| || Sbjct 1107821 ATTCCTTTCTTACCCTGGAT-TTTGGCTTTTACATTTTCTATTGTATCCGAAGGTTCAAC 1107763 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || ||||| ||||| ||||| ||||||||| Sbjct 1107762 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATC 1107714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322872174920000