Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq48864 251 7e-62 seq199 114 1e-20 seq75 95.1 1e-14 >seq48864 Length=438413 Score = 251 bits (278), Expect = 7e-62 Identities = 533/785 (68%), Gaps = 13/785 (2%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| | ||| ||| || || | ||||||||||| ||| | | Sbjct 419683 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 419742 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| |||| |||||||| |||||||| || || |||||||| | | ||||||| |||| Sbjct 419743 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 419802 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACAATA 16064 |||| ||||| |||||| | || | | | |||| |||||| ||||| || | Sbjct 419803 TAAAGTCAAATGGATTTCCT--ACTCT-GAAAACCTCGCTAAATCCCAGTTCCAGCATAA 419859 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||||| || ||||| || || ||||| |||| | || | |||||||| | || | | Sbjct 419860 GTCTATTGGCAACAAACTCAATGTACTGCTTCA-TCAAGCGCAGTTCATCTCAATGAGCT 419918 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTA-TATTAACCGCTTCAATGATTATA 16183 | ||||| | || ||||| | || | | ||| | | || || || | || || || Sbjct 419919 TCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT 419978 Query 16184 TCTCTTACTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 ||| | ||| | || | ||||||| || || | | |||| ||||| | | |||| Sbjct 419979 TCTTTCACT-CTCTGCTCTAACGGATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAAC 420037 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 || ||| || || | || || || || || | || || |||||||| ||||| ||||| Sbjct 420038 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 420097 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 |||| ||||| || | ||| ||||| ||||| || |||| |||||| || ||||| Sbjct 420098 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTC 420157 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatccat 16420 ||||| ||||| || || | || || || || || || ||| | | ||||| Sbjct 420158 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTC-CCCAATCCAA 420216 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 ||||||| ||| | | || ||||| |||| | || || ||| | || | | Sbjct 420217 CGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGA 420276 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 | | |||||||| |||| ||| ||||| || || || |||||||||||||| ||| Sbjct 420277 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 420336 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 | || || ||||| || || || || ||||| || || | ||||| | || | ||| Sbjct 420337 GGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTCAACT 420396 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 || | ||| | || | | |||||| || || || ||||| | ||| |||| || Sbjct 420397 TCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAA 420456 Query 16661 GCAAG 16665 || || Sbjct 420457 GCCAG 420461 Score = 246 bits (272), Expect = 3e-60 Identities = 532/785 (68%), Gaps = 13/785 (2%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| | ||| ||| || || | ||||||||||| ||| | | Sbjct 414760 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 414819 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| |||| |||||||| |||||||| || || |||||||| | | ||||||| |||| Sbjct 414820 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 414879 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACAATA 16064 |||| ||||| |||||| | || | | | |||| |||||| ||||| || | Sbjct 414880 TAAAGTCAAATGGATTTCCT--ACTCT-GAAAACCTCGCTAAATCCCAGTTCCAGCATAA 414936 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||||| || ||||| || || ||||| |||| | || | |||||||| | || | | Sbjct 414937 GTCTATTGGCAACAAACTCAATGTACTGCTTCA-TCAAGCGCAGTTCATCTCAATGAGCT 414995 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTA-TATTAACCGCTTCAATGATTATA 16183 | ||||| | || ||||| | || | | ||| | | || || || | || || || Sbjct 414996 TCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT 415055 Query 16184 TCTCTTACTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 ||| | ||| | || | ||||||| || || | | |||| ||||| | | |||| Sbjct 415056 TCTTTCACT-CTCTGCTCTAACGGATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAAC 415114 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 || ||| || || | || || || || || | || || |||||||| ||||| ||||| Sbjct 415115 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 415174 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 |||| ||||| || | ||| ||||| ||||| || ||| |||||| || ||||| Sbjct 415175 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGACAGTAAAGAAGATTCCTTC 415234 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatccat 16420 ||||| ||||| || || | || || || || || || ||| | | ||||| Sbjct 415235 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTC-CCCAATCCAA 415293 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 ||||||| ||| | | || ||||| |||| | || || ||| | || | | Sbjct 415294 CGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGA 415353 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 | | |||||||| |||| ||| ||||| || || || |||||||||||||| ||| Sbjct 415354 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 415413 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 | || || ||||| || || || || ||||| || || | ||||| | || | ||| Sbjct 415414 GGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTCAACT 415473 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 || | ||| | || | | |||||| || || || ||||| | ||| |||| || Sbjct 415474 TCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAA 415533 Query 16661 GCAAG 16665 || || Sbjct 415534 GCCAG 415538 >seq199 Length=4383281 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | | ||| ||||||||| | | | || |||||||| | Sbjct 4235057 TTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAACG 4234998 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||| Sbjct 4234997 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 4234938 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 |||||||||||| ||||||| || Sbjct 4234937 CATAAAATCAAAGGGATTTTCTG 4234915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || |||||||| || ||||||||||||||| ||| Sbjct 4213862 ATCCAAGTTCCACAAGTAATCTGTCTGCTACAAATTCAATGTACTGTTTCATTAAAACAC 4213803 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | |||||| | |||||||||||||| Sbjct 4213802 AATTCATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAA 4213760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || |||||||| || ||||||||||||||| ||| Sbjct 4216004 ATCCAAGTTCCACAAGTAATCTGTCTGCTACAAATTCAATGTACTGTTTCATTAAAACAC 4215945 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | |||||| | |||||||||||||| Sbjct 4215944 AATTCATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAA 4215902 >seq75 Length=11204613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 8448222 TCATCTCTGCTAATCAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8448281 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 8448282 AGCCAGAATATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 8448341 Query 16379 AC 16380 || Sbjct 8448342 AC 8448343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| ||||| || || || | |||||||||||| ||||| || | Sbjct 8452268 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 8452327 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | ||||| | ||| || ||||| Sbjct 8452328 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTC 8452382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462218593950000