Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq598 199 3e-46 seq388 104 2e-17 >seq598 Length=3788045 Score = 199 bits (220), Expect = 3e-46 Identities = 513/772 (66%), Gaps = 32/772 (4%) Strand=Plus/Minus Query 20033 TGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG 20092 || || |||||||||| | | || || || || ||||| ||||| || ||| | |||| Sbjct 455948 TGCGAGATGAATTTCCTCTGCTGACAACCAA-CGTGTATTCTGGAAGGGGGTTTTGGAAG 455890 Query 20093 AGTTATTATGGTTTATTAAAGGATCAACAAATTCTAC----CGAGCTTGTA-------GA 20141 |||| | |||||||| || ||||| ||||| ||| | | ||| || || Sbjct 455889 AGTTGCTTTGGTTTATCAAGGGATCCACAAACGCTAATAAACTATCTTCTAAGGGAGTGA 455830 Query 20142 AAAA---GGA-GTTAA-GATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAAT 20196 ||| ||| | || ||| | | | ||| ||||| || | ||||| ||||| Sbjct 455829 AAATCTGGGATGACAATGATCTCGGGGCTACAATGATCTCAGGACTTTTTGGACAGCCTG 455770 Query 20197 GGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACAT 20256 ||||| || | | |||| || || ||||||||||| ||||| || || ||||||||| Sbjct 455769 GGATTCTCCACCAGAGAAGAAGGTGACTTGGGTCCTGTTTATGGCTTCCAGTGGAGACAT 455710 Query 20257 TTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTA 20316 ||||| || ||||| | ||||| || | |||| ||| ||| |||||| ||| | Sbjct 455709 TTTGGGGCAGAATACAAAAATATGAATTCAGACTATTCTGGGCAAAAAGTAGACCAACTG 455650 Query 20317 CAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCC 20376 ||||| || ||| | || ||| | || || ||||||||||| | || || || Sbjct 455649 CAAAAAGTGATTGACACTATCAAAGCCAATCCTGACGACAGAAGACTCATCACCTGTGCT 455590 Query 20377 TGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTT 20436 ||||| | |||| | | ||| | ||||| ||||||| | || ||| ||||| || Sbjct 455589 TGGAATCCAAAAGCTCTCCCTCTGATGGCGCAGCCTCCAGGCCACGCGCTCTGCCAGTTC 455530 Query 20437 TACGTTGCTAATAATGAATTGTCGTGTCAAATGTATC-AAC----------GATCCGCTG 20485 | ||| | | || |||| || || | |||| || | || | | Sbjct 455529 TGCGTGGTGGACGGCGAGCTGTCCTGCCAGCTCTATCGGACGGAGGTCGGAGGTCGGGAG 455470 Query 20486 ATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTG 20545 | ||| ||||| |||||||| ||||| || ||||| | ||| ||||||||||||| Sbjct 455469 ACGTGGTCCTGGGCACGCCTTTCAACATTGCCAGCTATGCCCCGCTCACGTATATGATTG 455410 Query 20546 CACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTT 20605 |||| | ||||| | | | |||||||| || || || | |||||| | |||| || Sbjct 455409 CACACATCACAGACCTTAGGCCAGGTGACTTTGTACATACTTTGGGAGACCCACATAGTT 455350 Query 20606 ACCTTAATCAT-ATAGAACCTTTAAAATTACAG-TTAACACGACAACCAAAACAATTCCC 20663 |||| |||||| || || ||| | ||| || | | || |||||| || || || Sbjct 455349 ACCTGAATCATGGCTGAGCCACCGAAAATTCAGCTTCAGA-GAGAACCAAGACCTTTTCC 455291 Query 20664 AACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGT 20723 | || |||| ||||| ||| | | ||| | ||||| ||| |||| || ||| Sbjct 455290 GAAGCTCAACATTCTTCGAAAAGTTGAGAAAATTGATGATTTCAAACCTGAAGACTTTCA 455231 Query 20724 GTTAGAAGGTTATAATCCCCATAATTCAATT-CCAATGGAAATGTCTGTTTA 20774 | | ||||| || ||||| ||| | ||| |||||||||| || |||| Sbjct 455230 GGTCGAAGGATACAATCCACATCTGACTATTAAAAATGGAAATGGCTCTTTA 455179 >seq388 Length=3990105 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| |||||||||| ||| ||| ||||| || ||||| | | Sbjct 2997299 AGATCTCCCTCTGATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGA 2997358 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | ||| |||| || || | || || | || | || ||||| ||||| || || || Sbjct 2997359 TGGTGAGCTGTCCTGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTT 2997418 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| || ||||| ||||| ||||||||||||||||| | |||| Sbjct 2997419 CAACATTGCCAGCTATGCCCTGCTCACGTATATGATTGCACACATCACAG 2997468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398937098458750