Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq48864 246 3e-60 seq742 100 3e-16 seq631 100 3e-16 seq75 96.9 3e-15 seq44217 89.7 5e-13 seq619 82.4 7e-11 seq199 82.4 7e-11 >seq48864 Length=438413 Score = 246 bits (272), Expect = 3e-60 Identities = 530/783 (68%), Gaps = 11/783 (1%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 419683 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 419742 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 419743 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 419802 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 |||| |||||||||||| | | || || | | | || ||||| | | | || Sbjct 419803 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 419862 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 ||| |||| |||||||| || || ||| || | || ||||| | || || || | Sbjct 419863 TATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 419921 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCGTTTATAATAATC 14155 |||| | | || | || || | ||| | | ||||| | | | || || || Sbjct 419922 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT-TC 419980 Query 14156 GT--AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 | | | | | || | ||| | | || |||| || || | | |||| || Sbjct 419981 TTTCACTCTCTGCTCTA-ACGGATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAACAT 420039 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 ||| || | | ||||||||| ||||| ||||| || |||||||| | || ||||||| Sbjct 420040 TACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCA 420099 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 || ||||| || | ||| ||||| || || || || | |||||| ||||| || | Sbjct 420100 GTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTCTA 420159 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGATATCCATTTT 14392 |||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 420160 CTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGC 420219 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 ||||| || | | || || | | || ||| |||||||| ||| | || | | | Sbjct 420220 AAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAAAT 420279 Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 ||| | ||||| | | | |||||| || |||||||| || |||||||||||||| || Sbjct 420280 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGT 420339 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT--ACCT 14570 ||||||||||| || || || || ||||| ||||| | ||||||| | ||| || | Sbjct 420340 ATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTG--TAATGTCAACTT 420397 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 || | ||||| || ||| |||||||| || || ||||||| ||| |||| || | Sbjct 420398 CTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAG 420457 Query 14631 CCA 14633 ||| Sbjct 420458 CCA 420460 Score = 241 bits (266), Expect = 1e-58 Identities = 529/783 (68%), Gaps = 11/783 (1%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 414760 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 414819 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 414820 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 414879 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 |||| |||||||||||| | | || || | | | || ||||| | | | || Sbjct 414880 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 414939 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 ||| |||| |||||||| || || ||| || | || ||||| | || || || | Sbjct 414940 TATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 414998 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCGTTTATAATAATC 14155 |||| | | || | || || | ||| | | ||||| | | | || || || Sbjct 414999 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT-TC 415057 Query 14156 GT--AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 | | | | | || | ||| | | || |||| || || | | |||| || Sbjct 415058 TTTCACTCTCTGCTCTA-ACGGATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAACAT 415116 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 ||| || | | ||||||||| ||||| ||||| || |||||||| | || ||||||| Sbjct 415117 TACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCA 415176 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 || ||||| || | ||| ||||| || || || | | |||||| ||||| || | Sbjct 415177 GTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGACAGTAAAGAAGATTCCTTCTA 415236 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGATATCCATTTT 14392 |||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 415237 CTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGC 415296 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 ||||| || | | || || | | || ||| |||||||| ||| | || | | | Sbjct 415297 AAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAAAT 415356 Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 ||| | ||||| | | | |||||| || |||||||| || |||||||||||||| || Sbjct 415357 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGT 415416 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT--ACCT 14570 ||||||||||| || || || || ||||| ||||| | ||||||| | ||| || | Sbjct 415417 ATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTG--TAATGTCAACTT 415474 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 || | ||||| || ||| |||||||| || || ||||||| ||| |||| || | Sbjct 415475 CTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAG 415534 Query 14631 CCA 14633 ||| Sbjct 415535 CCA 415537 >seq742 Length=4422061 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 132201 GATCCCAAAAAGATG-CATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGG 132259 |||||||||| |||| ||| |||| || || | || |||||| || ||| |||| || | Sbjct 3104459 GATCCCAAAA-GATGTCATGATGGCACTATTGCATTCACAAGCATTGATGTGCACAATGA 3104517 Query 132260 TGTATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTT 132319 ||| |||| || || | || ||||||||||| | || || || || || | ||||| Sbjct 3104518 TGTGGCCCCCTCAAGACCTGGTGATTTGGAAATACTTGGTTACTGCATGATCCAGTGGTT 3104577 Query 132320 AGGTGGTAAATTGCCATGGGAAAATGATTTAAAAAATTGTAAATATGTAATGGAGTCAAA 132379 |||| | | || ||||| || |||| ||| ||| ||| ||||| | || || || Sbjct 3104578 CAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATTCTAACTATGTTAGAGATTCCAA 3104637 Query 132380 GATTAAATACATGAACGATATTGGAAATTTAATG 132413 |||| ||||| | |||||| || ||| ||| Sbjct 3104638 AATTAGATACAGAGAAAATATTGCAAGTTTGATG 3104671 >seq631 Length=3768130 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 132201 GATCCCAAAAAGATG-CATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGG 132259 |||||||||| |||| ||| |||| || || | || |||||| || ||| |||| || | Sbjct 1754123 GATCCCAAAA-GATGTCATGATGGCACTATTGCATTCACAAGCATTGATGTGCACAATGA 1754065 Query 132260 TGTATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTT 132319 ||| |||| || || | || ||||||||||| | || || || || || | ||||| Sbjct 1754064 TGTGGCCCCCTCAAGACCTGGTGATTTGGAAATACTTGGTTACTGCATGATCCAGTGGTT 1754005 Query 132320 AGGTGGTAAATTGCCATGGGAAAATGATTTAAAAAATTGTAAATATGTAATGGAGTCAAA 132379 |||| | | || ||||| || |||| ||| ||| ||| ||||| | || || || Sbjct 1754004 CAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATTCTAACTATGTTAGAGATTCCAA 1753945 Query 132380 GATTAAATACATGAACGATATTGGAAATTTAATG 132413 |||| ||||| | |||||| || ||| ||| Sbjct 1753944 AATTAGATACAGAGAAAATATTGCAAGTTTGATG 1753911 >seq75 Length=11204613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 8444858 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 8444917 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| |||||||||||| Sbjct 8444918 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 8444953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 8452284 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8452343 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 8452344 GAAGCCATAGAAACAGCGGGCTTCTG 8452369 >seq44217 Length=341162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||| |||| || |||||||| |||| ||| || | | |||| |||| | || | Sbjct 123257 CATCCAAACCTTGAACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTG 123198 Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760 | | ||| || ||| |||||| | ||| | | ||| ||| ||||| | || ||| | Sbjct 123197 CAATTCGGTCACCTTTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACAC 123138 Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATA 11820 ||| || || ||||||||||||||||| || || |||||| ||||| | | | | Sbjct 123137 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTG 123078 Query 11821 ACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACA 11857 | | ||||| | ||| |||| || ||||||||| Sbjct 123077 CAGCCAAGCCAGAACATGGAGCTACTCTTCCATAACA 123041 >seq619 Length=10005445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAATTTGC 11699 |||| |||| || |||||||| |||| ||| | | ||| |||| |||| | || Sbjct 1647275 CATCCAAACCTTGAACTTCTTCTATTTCTGGGCAAAAAAATTTGTTCACAAATGAGCTGT 1647334 Query 11700 GCCACTC-GATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAAC 11758 || | || | || ||| |||||| | | | | ||||| || ||||| | || ||| Sbjct 1647335 GCAATTCTGGTCACCTTTTTTAACTTCAGACTTTTTTTTGTCAAAATTAAAGAGTACAAC 1647394 Query 11759 TCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 ||||| || || ||||||||||||||||| || || |||||| ||||||| Sbjct 1647395 ACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 1647446 >seq199 Length=4383281 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 |||||||| |||| || | ||| |||||||| || || | | ||||| | | Sbjct 4235056 TAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCT-GCCATAACTGCAAAACG 4234998 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || ||||| ||| |||||||| || ||||| ||||| | ||| || ||||| Sbjct 4234997 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 4234938 Query 13975 CATAAAATCAAATGGATTT 13993 |||||||||||| |||||| Sbjct 4234937 CATAAAATCAAAGGGATTT 4234919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482039612010000