Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq44605 95.1 9e-15 seq436 89.7 4e-13 seq42965 82.4 6e-11 >seq44605 Length=175201 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| || || ||||| ||||||||||| | || || | | ||||||||| ||| Sbjct 654 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATCTTCCAACTGT 713 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || |||||||| ||||| || | ||||||||| | |||| | Sbjct 714 TTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCCTGGATTT-T 772 Query 18243 TGC-TTGACCTGTGCAACAGTGT-CACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 || || || | | | | || | || ||| || || | ||||||| | || || | Sbjct 773 GGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGATGGTCTTCCCTG 832 Query 18301 TCAATGTTTTTACAAAAATTTGCATTTT 18328 | | |||||||||||||| ||||| || Sbjct 833 TAAGGGTTTTTACAAAAATCTGCATCTT 860 >seq436 Length=2687165 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| |||||||||||||| | | || | |||| Sbjct 806380 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 806439 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || ||||| || | |||||| ||||| Sbjct 806440 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCC 806499 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| || | ||||||| | Sbjct 806500 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 806559 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 806560 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 806591 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| |||||||||||||| | | || | |||| Sbjct 806608 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 806667 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||| ||||| Sbjct 806668 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 806727 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| ||| || || | ||||||| | Sbjct 806728 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 806787 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || | || || ||||| || |||||||| Sbjct 806788 TTGCCAGTGAGAGTCTTCACAAAGATCTGCATTTT 806822 >seq42965 Length=562198 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| || || || || || || ||||||||||||| || | | |||| Sbjct 302567 AGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCT 302626 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | |||||||| || Sbjct 302627 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCT 302686 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||||| || | ||||||| | Sbjct 302687 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 302746 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| || | || ||||| || || |||||| Sbjct 302747 TTGCCAGTTAGGGTCTTTACGAAGATCTGCATT 302779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379109369808750