Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq53 102 2e-16 >seq53 Length=2810707 Score = 102 bits (112), Expect = 2e-16 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 ||| ||||||| ||| || || | || || ||| |||||||||||||| || ||||| Sbjct 1302053 TCCCCCAGCAGACTTAGAAATCAAAGCACACTGCTTTAGAGTATCATAAATCCCTTCAAT 1301994 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACT-GTTCCAC 94909 ||| ||||||| | | ||||||||| | | ||||||| || | || | || ||| Sbjct 1301993 GCTGTCATCTTTCATGTTCAGAAGGAAATAGGTAGAAAGTTCTGG-GCGATTGGTGCCAG 1301935 Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969 ||| || || ||||| || ||||| || || | | | || | || | |||||||| Sbjct 1301934 CATTGAAGAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGAAAGAAGGTTATATGTTT 1301875 Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 |||| ||| | |||||| | |||||| || |||| || | ||| | ||||| | Sbjct 1301874 CAATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGATACCCTCATCAACATGTGTT 1301815 Query 95030 GAGGGCGCTCAACCA 95044 | || | ||| ||| Sbjct 1301814 GCGGTCTGTCAGCCA 1301800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988940538466250