Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq388 136 3e-27 seq398 105 6e-18 seq46569 96.9 3e-15 seq579 96.9 3e-15 seq598 95.1 1e-14 seq44019 86.0 5e-12 >seq388 Length=3990105 Score = 136 bits (150), Expect = 3e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| || |||| |||||| || ||||| |||||||| ||||| || || Sbjct 2997472 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2997413 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || ||||||||||| | ||||||||||| ||||||||||||||||| || || Sbjct 2997412 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2997353 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||| ||||| || | | || || ||||| || |||||| | | ||| || Sbjct 2997352 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAGAGGGAGATC 2997300 >seq398 Length=3125954 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || | | || |||||||| ||||| | || ||||| | |||||| Sbjct 2057388 GCATCATCCAGACTCTTGGCAAGAAAGTGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 2057329 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || |||| || ||||||||||| | ||| || ||||||||||| ||||||||||| Sbjct 2057328 CTGAAAACAAAATTAATTCTGTCTTTTAAAGGCCGATTCTTTTCAGGAATGGAAAACCAG 2057269 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || | ||| | || |||| | || || | || |||||| Sbjct 2057268 GTCTTCCTACCCATAATCACGATATTTTGTTTACCTTCTACTGAAGAAGTTATGGTCATT 2057209 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| |||||| | | ||| || || || ||||| |||| Sbjct 2057208 CTCTGGAAATACTTAAATTCATTCCTGAGCAGAGGCCAGGGCA 2057166 >seq46569 Length=4817335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || || | || ||||| || ||||| | || ||||| | |||||| Sbjct 4565619 GCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 4565560 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || | || | ||||||||| | | | ||| || ||||||||||| ||||||||||| Sbjct 4565559 CTGAGAACTAAATTAATTCTATCCTTTAAAGGCCGATTCTTTTCAGGAATGGAAAACCAG 4565500 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || ||| | || |||| | || || | |||| ||| || Sbjct 4565499 GTCTTCCTACCCATAATCACGGTATTTTGTTTACCTTCTACTGAAGAGGTAGTGGTCGTT 4565440 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| |||||| | | ||| || || || ||||| |||| Sbjct 4565439 CTCTGGAAATACTTAAATTCATTCCTGAGTGGAGGCCAGGGCA 4565397 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || || | || ||||| || ||||| | || ||||| | |||||| Sbjct 4191887 GCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 4191946 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || | || | ||||||||| | | | ||| | ||||||||||| |||||||| || Sbjct 4191947 CTGAGAACTAAATTAATTCTATCCTTTAAAGGCTGATTCTTTTCAGGAATGGAAAATCAG 4192006 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || ||| | || |||| | || || | | | |||||| Sbjct 4192007 GTCTTCCTACCCATAATCACGGTATTTTGTTTACCTTCTACTGAAGAAATTGTGGTCATT 4192066 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| |||||| | | ||| || || || ||||| |||| Sbjct 4192067 CTCTGGAAATACTTAAATTCATTCCTGAGCAGAGGCCAGGGCA 4192109 >seq579 Length=4107578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || | | || |||||||| ||||| | || ||||| | |||||| Sbjct 165538 GCATCATCCAGACTCTTGGCAAGAAAGTGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 165479 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || | || || ||||||||||| | ||| || ||||||||||| ||||||||||| Sbjct 165478 CTGAGAACAA-ATTAATTCTGTCTTTTAAAGGCCGATTCTTTTCAGGAATGGAAAACCAG 165420 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || | ||| | || |||| | || || | || | |||||| Sbjct 165419 GTCTTCCTACCCATAATCACGATATTTTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 165360 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| ||||| | | ||| || || || ||||| |||| Sbjct 165359 CTCTGGAAATAATTAAGTTCATTCCTGAGCGGAGGCCAGGGCA 165317 >seq598 Length=3788045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 413/651 (63%), Gaps = 32/651 (5%) Strand=Plus/Plus Query 20957 GTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATA 21016 ||| ||||| || || |||||||| || || | ||| | |||| ||| || |||| ||| Sbjct 455360 GTCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGCAATCATATA 455419 Query 21017 CGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCT 21076 ||| || |||| |||||||| ||||| || || || ||| ||| ||| | ||||| Sbjct 455420 CGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTCTCCCGACCT 455479 Query 21077 CTGG-----------TACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACAC 21125 | | || ||||||||||||||||| || ||||| | ||||| || Sbjct 455480 CCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAGAACTGGCAG 455539 Query 21126 AAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATA 21185 | |||| | ||||| | |||||| | | ||| | || ||||| || || | Sbjct 455540 AGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAAGCACAGGTG 455599 Query 21186 ACGATGCGCCGATCGT-GGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTC 21244 | || | | |||| || | || || || || | ||| | |||| ||||| Sbjct 455600 ATGAGTCTTCTGTCGTCAGGATTGGCT-TTGATAGTGTCAATCACTTTTTGCAGTTGGTC 455658 Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 || || || |||| | | |||| || ||||||||||||||||| Sbjct 455659 TACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAATGTCTCCA 455718 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG- 21363 |||||| || || || || |||| || || || | | ||| ||| | || | Sbjct 455719 CTGGAAGCCATAAACAGGACCCAAGTCACCTTCTTCTCTGGTGGAGAATCCCAG-GCTGT 455777 Query 21364 CCAAAAAGGCGCGGGA----------CCCG------TGCGCGTCCCAAATTTTTACGCCG 21407 |||||||| | | || |||| | | ||||| ||||| || || Sbjct 455778 CCAAAAAGTCCTGAGATCATTGTAGCCCCGAGATCATTGTCATCCCAGATTTTCACTCCC 455837 Query 21408 CGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACG 21467 || |||| | | || ||||| ||| |||||||||| |||||||| |||| Sbjct 455838 TTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAACCAAAGCAACTCTTCCAAA 455897 Query 21468 ACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATAT 21527 || ||| |||| || || | ||||| || | ||||||||| || || | ||| | || Sbjct 455898 ACCCCCTTCCAGAATACAC-GTTGGTTGTCAGCAGAGGAAATTCATCTCGCAGGCTGTAG 455956 Query 21528 CGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCC 21578 || ||| | | | |||||| ||| ||| || || | | | ||||||| Sbjct 455957 CGCGCCCGCATGCAGAACACCGACAGGGTATCCGTGCACTTGCGGTCCTCC 456007 >seq44019 Length=1131195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 194/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || |||||||| | ||||| | | ||||||| ||| | ||| | ||| || Sbjct 313326 CTTATAAACAGGACTACCTCCCACTAGCCAGACCATGTCCACTTGATTAGTTAATTCTGG 313267 Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 ||| || ||| | || | ||||| || || || | || ||||| || ||||| | | Sbjct 313266 TTGCTCAATA-AGTTTTAGGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTGGTG 313208 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || | ||||||||| | | | ||| | |||| Sbjct 313207 GAGGTTCCTTGAGTTCTCTACTAAGAACTAAATTAATTCTATCCTTTAAAGGCTGATTCT 313148 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 ||||||| ||||| ||||| || | | |||||||| | | ||||| || |||| | Sbjct 313147 TTTCAGGAATGGACAACCAGGTCTTCCTACCCATAATCATGATATTCTGTTTACCTTCTG 313088 Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177 | || | || | |||||| |||| |||||| | | ||| || || || Sbjct 313087 CTGAAGAGGTTGTGGTCATTCTCTGGAAATACTTAAATTCATTCCTGAG 313039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427511413860000