Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq48864 257 2e-63 seq75 96.9 3e-15 seq44217 86.0 6e-12 seq199 82.4 7e-11 >seq48864 Length=438413 Score = 257 bits (284), Expect = 2e-63 Identities = 535/786 (68%), Gaps = 17/786 (2%) Strand=Plus/Plus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 419683 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 419742 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 419743 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 419802 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 |||| |||||||||||| | | || || | | | || ||||| | | | || Sbjct 419803 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 419862 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 ||| |||| ||||||||| || || ||| || | || ||||| | || || || | Sbjct 419863 TATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 419921 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCTTTTATAATAATT 13823 |||| | | || | || || | ||| | | ||||| | | ||||| ||| Sbjct 419922 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCAT---TGATAATGATT 419978 Query 13824 GTAATAA-TCTCAT-TAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGCAA 13878 | | |||| | || | |||| | ||| | ||| || || | | |||| Sbjct 419979 TCTTTCACTCTCTGCTCTAACG--GATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAA 420036 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 || ||| || | | ||||||||| ||||| ||||| || |||||||| | || |||| Sbjct 420037 CATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCA 420096 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 ||| || ||||| || | ||| ||||| ||||| || || | |||||| ||||| | Sbjct 420097 TCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTT 420156 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGATATCCAT 14057 | ||||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 420157 CTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAA 420216 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 ||||| || | | || || | | || ||| |||||||| ||| | || | | Sbjct 420217 CGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGA 420276 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 ||||| | ||||| | | | |||||| || |||||||| || |||||||||||||| Sbjct 420277 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 420336 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT--A 14235 ||||||||||||| || || || || ||||| || || | ||||| | | ||| | Sbjct 420337 GGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTG--TAATGTCAA 420394 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| | ||||| || ||| |||||||| || || ||||||| ||| |||| | Sbjct 420395 CTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGA 420454 Query 14296 ATGCCA 14301 | |||| Sbjct 420455 AAGCCA 420460 Score = 251 bits (278), Expect = 7e-62 Identities = 534/786 (68%), Gaps = 17/786 (2%) Strand=Plus/Plus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 414760 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 414819 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 414820 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 414879 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 |||| |||||||||||| | | || || | | | || ||||| | | | || Sbjct 414880 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 414939 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 ||| |||| ||||||||| || || ||| || | || ||||| | || || || | Sbjct 414940 TATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 414998 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCTTTTATAATAATT 13823 |||| | | || | || || | ||| | | ||||| | | ||||| ||| Sbjct 414999 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCAT---TGATAATGATT 415055 Query 13824 GTAATAA-TCTCAT-TAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGCAA 13878 | | |||| | || | |||| | ||| | ||| || || | | |||| Sbjct 415056 TCTTTCACTCTCTGCTCTAACG--GATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAA 415113 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 || ||| || | | ||||||||| ||||| ||||| || |||||||| | || |||| Sbjct 415114 CATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCA 415173 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 ||| || ||||| || | ||| ||||| ||||| || | | |||||| ||||| | Sbjct 415174 TCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGACAGTAAAGAAGATTCCTT 415233 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGATATCCAT 14057 | ||||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 415234 CTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAA 415293 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 ||||| || | | || || | | || ||| |||||||| ||| | || | | Sbjct 415294 CGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGA 415353 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 ||||| | ||||| | | | |||||| || |||||||| || |||||||||||||| Sbjct 415354 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 415413 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT--A 14235 ||||||||||||| || || || || ||||| || || | ||||| | | ||| | Sbjct 415414 GGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTG--TAATGTCAA 415471 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| | ||||| || ||| |||||||| || || ||||||| ||| |||| | Sbjct 415472 CTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGA 415531 Query 14296 ATGCCA 14301 | |||| Sbjct 415532 AAGCCA 415537 >seq75 Length=11204613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 8444858 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 8444917 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 8444918 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 8444953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 14114 TAAATA-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 |||||| || | | ||||| | | | |||||| || |||||||| | |||||||||| Sbjct 8452256 TAAATACTTACCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTT 8452315 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||| |||||||||||||| || || || || ||||| || || | ||||| Sbjct 8452316 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTC 8452367 >seq44217 Length=341162 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 11308 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAG 11367 |||| |||| || |||||||| |||| ||| || | | |||| |||| | || | Sbjct 123257 CATCCAAACCTTGAACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTG 123198 Query 11368 CCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11427 | | || || ||| |||||| | ||| | | ||| ||| ||||| | || ||| | Sbjct 123197 CAATTCGGTCACCTTTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACAC 123138 Query 11428 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATA 11487 ||| || || ||||||||||||||||| || || |||||| ||||| | | | | Sbjct 123137 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTG 123078 Query 11488 ACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACA 11524 | | ||||| | ||| |||| || ||||||||| Sbjct 123077 CAGCCAAGCCAGAACATGGAGCTACTCTTCCATAACA 123041 >seq199 Length=4383281 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||||| |||| || | ||| |||||||| || || | | ||||| | | Sbjct 4235056 TAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCT-GCCATAACTGCAAAACG 4234998 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || ||||| ||| |||||||| || ||||| ||||| | ||| || ||||| Sbjct 4234997 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 4234938 Query 13643 CATAAAATCAAATGGATTT 13661 |||||||||||| |||||| Sbjct 4234937 CATAAAATCAAAGGGATTT 4234919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479423672550000