Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq48864 230 2e-55 seq742 100 3e-16 seq631 100 3e-16 seq44217 93.3 4e-14 seq75 87.8 2e-12 seq619 82.4 7e-11 >seq48864 Length=438413 Score = 230 bits (254), Expect = 2e-55 Identities = 529/785 (67%), Gaps = 15/785 (2%) Strand=Plus/Plus Query 13313 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 419683 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 419742 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 |||| |||| ||||| || ||||| |||||||| || ||||||||| | ||||| |||| Sbjct 419743 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 419802 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 |||| || ||||||||| | | || || | | | || ||||| | | | || Sbjct 419803 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 419862 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 ||| |||| ||||||||| || || ||| || | || ||||| | || || || | Sbjct 419863 TATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 419921 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCGTTTATAATAATC 13611 |||| | | || | || || | ||| | | ||||| | | | || || || Sbjct 419922 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT-TC 419980 Query 13612 TTAATAATGTCAT-TAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGCAAA 13667 || | | || | || | |||| | ||| | ||| || || | | |||| Sbjct 419981 TTTC-ACTCTCTGCTCTAACG--GATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAAC 420037 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 || ||| || | | ||||||||| ||||| ||||| || |||||||| | || ||||| Sbjct 420038 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 420097 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || ||||| || | ||| ||||| || || || || | |||||| ||||| || Sbjct 420098 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTC 420157 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGATATCCATT 13846 ||||| ||||| |||| ||||||||| | | || | ||||| ||||| Sbjct 420158 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAAC 420217 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| || | | || || | | || ||| ||||| || ||| |||| | | Sbjct 420218 GCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAA 420277 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 |||| | ||||| | | | |||||| || |||||||| || |||||||||||||| Sbjct 420278 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAG 420337 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT--AC 14024 |||||||||| || || || || || ||||| ||||| | ||||||| | ||| || Sbjct 420338 GTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTG--TAATGTCAAC 420395 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || | ||||| || ||| ||||||||| || || ||||||| ||| |||| || Sbjct 420396 TTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAA 420455 Query 14085 TGCCA 14089 |||| Sbjct 420456 AGCCA 420460 Score = 226 bits (250), Expect = 3e-54 Identities = 528/785 (67%), Gaps = 15/785 (2%) Strand=Plus/Plus Query 13313 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 414760 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 414819 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 |||| |||| ||||| || ||||| |||||||| || ||||||||| | ||||| |||| Sbjct 414820 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 414879 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 |||| || ||||||||| | | || || | | | || ||||| | | | || Sbjct 414880 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 414939 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 ||| |||| ||||||||| || || ||| || | || ||||| | || || || | Sbjct 414940 TATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 414998 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCGTTTATAATAATC 13611 |||| | | || | || || | ||| | | ||||| | | | || || || Sbjct 414999 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT-TC 415057 Query 13612 TTAATAATGTCAT-TAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGCAAA 13667 || | | || | || | |||| | ||| | ||| || || | | |||| Sbjct 415058 TTTC-ACTCTCTGCTCTAACG--GATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAAC 415114 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 || ||| || | | ||||||||| ||||| ||||| || |||||||| | || ||||| Sbjct 415115 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 415174 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || ||||| || | ||| ||||| || || || | | |||||| ||||| || Sbjct 415175 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGACAGTAAAGAAGATTCCTTC 415234 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGATATCCATT 13846 ||||| ||||| |||| ||||||||| | | || | ||||| ||||| Sbjct 415235 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAAC 415294 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| || | | || || | | || ||| ||||| || ||| |||| | | Sbjct 415295 GCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAA 415354 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 |||| | ||||| | | | |||||| || |||||||| || |||||||||||||| Sbjct 415355 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAG 415414 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT--AC 14024 |||||||||| || || || || || ||||| ||||| | ||||||| | ||| || Sbjct 415415 GTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTG--TAATGTCAAC 415472 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || | ||||| || ||| ||||||||| || || ||||||| ||| |||| || Sbjct 415473 TTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAA 415532 Query 14085 TGCCA 14089 |||| Sbjct 415533 AGCCA 415537 >seq742 Length=4422061 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAG 131411 |||||| ||| |||||||||| |||| ||| |||| || || | | |||||| || | Sbjct 3104446 AGAGTACAAAGAGGATCCCAAAA-GATGTCATGATGGCACTATTGCATTCACAAGCATTG 3104504 Query 131412 ATATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTA 131471 || |||| || | ||| | || || || | || ||||||||||| | || || || | Sbjct 3104505 ATGTGCACAATGATGTGGCCCCCTCAAGACCTGGTGATTTGGAAATACTTGGTTACTGCA 3104564 Query 131472 TAATAAAATGGTTAGGTGGTAAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATG 131531 | || | ||||| |||| | | || ||||| ||| |||| ||| ||| ||| |||| Sbjct 3104565 TGATCCAGTGGTTCAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATTCTAACTATG 3104624 Query 131532 TAATGGAGTCAAAGATTAAATACATGAACGATATTGTAAATTTAATG 131578 | | || || || |||| ||||| | |||||| || ||| ||| Sbjct 3104625 TTAGAGATTCCAAAATTAGATACAGAGAAAATATTGCAAGTTTGATG 3104671 >seq631 Length=3768130 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAG 131411 |||||| ||| |||||||||| |||| ||| |||| || || | | |||||| || | Sbjct 1754136 AGAGTACAAAGAGGATCCCAAAA-GATGTCATGATGGCACTATTGCATTCACAAGCATTG 1754078 Query 131412 ATATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTA 131471 || |||| || | ||| | || || || | || ||||||||||| | || || || | Sbjct 1754077 ATGTGCACAATGATGTGGCCCCCTCAAGACCTGGTGATTTGGAAATACTTGGTTACTGCA 1754018 Query 131472 TAATAAAATGGTTAGGTGGTAAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATG 131531 | || | ||||| |||| | | || ||||| ||| |||| ||| ||| ||| |||| Sbjct 1754017 TGATCCAGTGGTTCAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATTCTAACTATG 1753958 Query 131532 TAATGGAGTCAAAGATTAAATACATGAACGATATTGTAAATTTAATG 131578 | | || || || |||| ||||| | |||||| || ||| ||| Sbjct 1753957 TTAGAGATTCCAAAATTAGATACAGAGAAAATATTGCAAGTTTGATG 1753911 >seq44217 Length=341162 Score = 93.3 bits (102), Expect = 4e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 11085 CCACTTGAACCAAATCCATTATTATCTCTATTT-GTACCATCTAAACATTTAACTTCTTT 11143 ||| | |||||||| || || | | | || | | || |||| |||| || |||||||| Sbjct 123294 CCAGTAGAACCAAAACC-TTCTGAACCCTGTGTAGTGTCATCCAAACCTTGAACTTCTTC 123236 Query 11144 AATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACTCGATCGCCTCTTTTAAT 11203 |||| ||| || | | |||| |||| | ||||| | ||| || ||| |||||| Sbjct 123235 TATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTGCAATTCGGTCACCTTTTTTAAC 123176 Query 11204 ATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATGTTACCCCTATAATCTTC 11263 | ||| | | ||| | | ||||| | || ||| |||| || || ||||||||||| Sbjct 123175 TTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTCTATAATCTTC 123116 Query 11264 ATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACCTTGGCGC 11323 |||||| || || |||||| ||||| | | | | | | ||||| | ||| || Sbjct 123115 ATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTGCAGCCAAGCCAGAACATGGAGC 123056 Query 11324 TATTCGTCCATAACA 11338 || || ||||||||| Sbjct 123055 TACTCTTCCATAACA 123041 >seq75 Length=11204613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 8444858 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 8444917 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 8444918 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 8444953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 8452284 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8452343 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 8452344 GAAGCCATAGAAACAGCGGGCTTCTG 8452369 >seq619 Length=10005445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 11122 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAATTTGT 11180 |||| |||| || |||||||| |||| ||| | | ||| |||| |||| | ||| Sbjct 1647275 CATCCAAACCTTGAACTTCTTCTATTTCTGGGCAAAAAAATTTGTTCACAAATGAGCTGT 1647334 Query 11181 GCCACTC-GATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAAC 11239 || | || | || ||| |||||| | | | | ||||| | ||||| | || ||| Sbjct 1647335 GCAATTCTGGTCACCTTTTTTAACTTCAGACTTTTTTTTGTCAAAATTAAAGAGTACAAC 1647394 Query 11240 TCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 ||||| || || ||||||||||||||||| || || |||||| ||||||| Sbjct 1647395 ACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 1647446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478285195230000