Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq44605 93.3 3e-14 >seq44605 Length=175201 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||| | ||||||||||| | ||| | ||| ||||||||| | ||||| || ||| Sbjct 630 CCACCATGAAGTCTTAACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAC 689 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||| | | || ||||| |||||||| |||||||||| || || ||||||| || Sbjct 690 AAAGTATGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGA 749 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCA-GCCTCGAC 43061 | ||||| || | ||| |||| || | | | ||| || | | || || Sbjct 750 ATTCCTTCCTTACCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAAC 809 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || || || || || || ||||| |||||||| ||||| || Sbjct 810 CTCTAGGGTGATGGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATCTT 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381133716943500