Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq598 100 3e-16 seq472 96.9 4e-15 seq338 91.5 1e-13 seq48498 86.0 6e-12 seq44605 84.2 2e-11 seq47707 82.4 8e-11 >seq598 Length=3788045 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||| ||||| ||||| |||||||| || || || | | ||||| || || Sbjct 3751585 ATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTG 3751526 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | ||||| | ||||||||| ||||| || || | || || ||||| Sbjct 3751525 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTGGATTTT 3751466 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||||| | ||| | || |||| ||||| || || | || | ||||| || || Sbjct 3751465 GGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 3751406 Query 143161 CAATGTTTTTACGAATATTTGCATA 143185 | ||||||||||| || |||||| Sbjct 3751405 GAGGGTTTTTACGAAAATCTGCATA 3751381 >seq472 Length=1492349 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || ||||| |||||||| || || || | | ||| Sbjct 1223270 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCGTC 1223211 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | ||||||||||| ||| || |||| || || Sbjct 1223210 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGGAATTTCTTCCTTATC 1223151 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || |||| ||||| || || | || | || Sbjct 1223150 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 1223091 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||||||| || ||||| Sbjct 1223090 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 1223058 >seq338 Length=5205875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| | || || ||||| |||||||| || || || | | || Sbjct 2398032 CAACACAAGATGAAGCATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 2398091 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 2398092 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2398151 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || |||| ||||| || || | || | || Sbjct 2398152 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2398211 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||||||| || ||||| Sbjct 2398212 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2398244 >seq48498 Length=215879 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| | ||||| ||||| |||||||| || || | | | || Sbjct 7154 CAACACAAGATGAAGCATGGATTCCTTTTGGATGTTGTAGTCAGACAAAGAACGCCCATC 7213 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | | || |||| ||||| || ||||| || || Sbjct 7214 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTCGCCGATCAGGAGGAATTCCTTCCTTATC 7273 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || |||| ||||| || || | || | || Sbjct 7274 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 7333 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCA 143183 ||| || || | ||||||||||| ||||||| Sbjct 7334 CTTCCCTGTGAGGGTTTTTACGAAAATTTGCA 7365 >seq44605 Length=175201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || | ||||| ||| || || ||||| |||||||| || || || | ||| Sbjct 645 AACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATCT 704 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||||| |||||| | ||||| | ||||||||||||||| || ||||| || | Sbjct 705 TCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCC 764 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCC-GTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || ||| |||||| || || | || | || Sbjct 765 TGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGATGGT 824 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | |||||||| || || ||||| Sbjct 825 CTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 857 >seq47707 Length=6282480 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || ||||| ||||||||||| || || | | || Sbjct 1043806 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1043747 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || || ||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 1043746 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1043687 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 | ||||| ||||| | ||| | || | ||||| || |||| || | || Sbjct 1043686 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1043627 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||| ||| || ||||| Sbjct 1043626 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1043594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506692762740000