Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004680.1 Length=59471 Score E Sequences producing significant alignments: (Bits) Value seq49917 767 0.0 seq50663 461 3e-125 seq38559 280 6e-71 >seq49917 Length=2087 Score = 767 bits (850), Expect = 0.0 Identities = 925/1251 (74%), Gaps = 9/1251 (1%) Strand=Plus/Plus Query 15082 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAAACC 15141 || || |||| |||||||||||||| || || ||||||| ||| | || ||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15142 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 15201 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15202 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTACTACGTGATTTGG 15261 ||||| |||| | || ||||||| || | |||||||| |||||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15262 CCGTCGTGGTGGCTTCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15321 ||| ||||||||||||| || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15322 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTTTGCGGTTGCAGTCCGGGTGG 15381 || | ||| |||||||||||||||||| |||||||| |||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15382 CTGGAGTTCATCAACAACGGCCTGTCGTTAAATC---CGG--ATATCCGGGCATGGTTCG 15436 ||||||||| ||||||||| |||||| | | ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15437 GCACCGTGCTGCAAGCCCTGTCGCGGGATGGGCTGTCTGTCCAGGCGTTTA-CACGCATG 15495 ||||| | |||||||||| ||| || ||| || || ||| | || || | ||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAG-ATG 485 Query 15496 CTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTG 15555 ||||| ||||| |||||| |||||||| || | |||||||| ||||| ||| Sbjct 486 CTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGC 545 Query 15556 GCCCGCACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAGGACGTTACCCAGTCGTA 15614 ||| || || || ||||||||| | | | || |||||||||| || |||| | || Sbjct 546 GCCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTA 604 Query 15615 CGGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGACAGGTGGGC 15674 ||||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 605 CGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGC 664 Query 15675 GAACCTGGACCAGCCGACGTATGTGTTTTCCACAGTGGACAGGTCGCAGATCACTGGCCC 15734 ||||| || ||| || || ||||||||||| |||| | ||||||| | || || Sbjct 665 CAACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCC 724 Query 15735 GACGAAAACGGTGCTTGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGG 15794 || ||||| || ||||||||| | || ||| ||||| ||||| || || || Sbjct 725 CACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGG 784 Query 15795 GGACATCTTCAAGCCGATCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCC 15854 |||||||||||||| ||||| ||||||| ||||| ||| |||| ||||| || || || Sbjct 785 TGACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCC 844 Query 15855 CGCGGTGGGTGTGGATTTTGAGCAGCCGTACGCCTATTTCGTGGCGCCTGAGCCGGGTGA 15914 | | | ||||| ||||| |||||||| |||||||| |||| || || || ||| || Sbjct 845 CAAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGA 904 Query 15915 GGACACCGGTGTCGATGCGTGCACGATCACTGACCACACACCGGAGGGTTGGCAGCACAT 15974 |||| || || ||| ||| | |||||||| || ||||| ||||| ||||| Sbjct 905 GGACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 15975 TATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCT 16034 || || || ||||| |||||||||||||||||||| |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 16035 GATCGATTCGCTGATGATTGTTGTCGGGTTCACTGGCATACCGTCAGATTTGTTGTCGGG 16094 ||| ||||||||||||| || ||||||||| | ||||| ||||| ||| || | ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 16095 GTTCCTGAATAACAGTTTCCTGGCGTTCCAGTTGATTCAGCACTACGACCGGCGTGATGA 16154 |||||||| ||||| ||||||||||||||| || | ||| ||| | || || || Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 16155 TGTTGGCCCGTACCATCCGGCGATTGAGCGGTTCTATCCGACAGCCTCGGCGCCGTACAA 16214 || ||||| | ||||||||||| ||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 16215 CATCGAAACGGTGTTTGCATTCATCAATGCTTTGTTTGATTCGCAGGGCAAGACGACGGC 16274 ||||||||| |||| || |||||||| || | || ||| | || || || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 16275 GACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTT 16325 | ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 461 bits (510), Expect = 3e-125 Identities = 469/609 (77%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15814 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCCGCGGTGGGTGTGGATTTT 15873 || ||||| | |||||||||||||| |||||||| ||||| | |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15874 GAGCAGCCGTACGCCTATTTCGTGGCGCCTGAGCCGGGTGAGGACACCGGTGTCGATGCG 15933 ||||| || ||||||||| | || ||||| || | ||||||||| | || || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15934 TGCACGATCACTGACCACACACCGGAGGGTTGGCAGCACATTATTGGTGGGCGTTCCCCA 15993 ||| |||||| |||| || || ||||||||||||||||| || ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 15994 AAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTGATCGATTCGCTGATGATT 16053 ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16054 GTTGTCGGGTTCACTGGCATACCGTCAGATTTGTTGTCGGGGTTCCTGAATAACAGTTTC 16113 || ||||||||| | || || || ||||| || | || || |||||||| ||||| ||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16114 CTGGCGTTCCAGTTGATTCAGCACTACGACCGGCGTGATGATGTTGGCCCGTACCATCCG 16173 ||||| |||||| | | |||||||||||||| || || || || ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16174 GCGATTGAGCGGTTCTATCCGACAGCCTCGGCGCCGTACAACATCGAAACGGTGTTTGCA 16233 ||| | ||||| |||||||| || || || || || |||||||||||||| || || || Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16234 TTCATCAATGCTTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 16293 |||||||| || | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16294 GGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGGATTGATGTCGCTGGTGT-T 16352 |||| ||| || || ||||| | |||||||| ||||||||||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16353 CATGTCACGTACCCGGATGGTGACTGACTACATCGAGAACGTGATGTGGCGGGTTACCCA 16412 || | | || ||| |||||| || ||||||||||||||||| |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16413 GGATGATCG 16421 ||||| || Sbjct 1929 AGATGAGCG 1937 Score = 165 bits (182), Expect = 3e-36 Identities = 201/274 (73%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 15370 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCCTGTCGTTAAATCCGGATATCCGGGCA 15429 ||||| |||||| |||| ||| |||||||| || ||||| || || || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15430 TGGTTCGGCACCGTGCTGCAAGCCCTGTCGCGGGATGGGCTGTCTGTCCAGGCGTTTACA 15489 |||||||||||| | |||||||||||| || ||||| ||||| | || | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15490 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 15549 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15550 ATGGTGGCCCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCAG 15609 || ||| || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15610 TCGTACGGTGTGGATACCCGCATGGATTTGTGGC 15643 | |||||||| |||||||| |||||| |||||| Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 141 bits (156), Expect = 4e-29 Identities = 207/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 15013 ATCGAGGCGTCGGGTGCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAA 15072 || ||||||||||| | || || || || || |||| ||||||| | ||| Sbjct 524 ATGGAGGCGTCGGGGACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAG 583 Query 15073 GGGAACAGCCCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATC 15132 || | ||||||||| | | |||||||||||||| || |||||||| || | Sbjct 584 GGTGATAGCCCTCTCGTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAG 643 Query 15133 GTCGAAACCGCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGT 15192 || || |||||||| ||||| | |||||| || || ||| || ||||||| Sbjct 644 GTAGAGACCGCGGGGCTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAA 703 Query 15193 GACAGCGCATGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTACTAC 15252 ||| |||| ||||| || || | ||| || |||||| | ||||| |||||||| ||| Sbjct 704 GACGGCGCTTGGACGGGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTAC 763 Query 15253 GTGATTTGGCCGTCGTGGTGGCTTCCGATTCAGGCACAGCCGTTCTCGCACGC 15305 ||||| |||||||| |||||||| || ||||| | |||||| || ||||| Sbjct 764 GTGATATGGCCGTCATGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 280 bits (310), Expect = 6e-71 Identities = 285/369 (77%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16036 ATCGATTCGCTGATGATTGTTGTCGGGTTCACTGGCATACCGTCAGATTTGTTGTCGGGG 16095 |||||| |||||||||| || ||||||||| | || || || ||||| || | || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16096 TTCCTGAATAACAGTTTCCTGGCGTTCCAGTTGATTCAGCACTACGACCGGCGTGATGAT 16155 |||||||| ||||| |||||||| |||||| | || |||||||||||||| || || || Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16156 GTTGGCCCGTACCATCCGGCGATTGAGCGGTTCTATCCGACAGCCTCGGCGCCGTACAAC 16215 || ||||| ||||| || ||| | ||||| |||||||| || || || || || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16216 ATCGAAACGGTGTTTGCATTCATCAATGCTTTGTTTGATTCGCAGGGCAAGACGACGGCG 16275 |||||||| || || || |||||||| || | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16276 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGGA 16335 || ||||||||| |||| ||| || || ||||| | |||||||| |||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16336 TTGATGTCGCTGGTGT-TCATGTCACGTACCCGGATGGTGACTGACTACATCGAGAACGT 16394 ||||||||| | || | || | | || ||| |||||| || |||||| |||||||||| Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16395 GATGTGGCG 16403 |||||||| Sbjct 748 CATGTGGCG 756 Score = 159 bits (176), Expect = 1e-34 Identities = 199/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15646 CCAGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCGACGTATGTGTTTTCC 15705 || |||||| |||||| || |||| | ||| || || || || ||||| ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15706 ACAGTGGACAGGTCGCAGATCACTGGCCCGACGAAAACGGTGCTTGATTCGGTGCTGCGC 15765 || || ||| | || ||| ||||| || ||||| || ||||||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15766 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAGCCGATCATCAAGCAGGTT 15825 || | ||||| || || ||||| || | |||||||||||| |||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15826 CCCGGCATGGACGGCGTGTTTTATGCGCCCGCGGTGGGTGTGGATTTTGAGCAGCCGTAC 15885 |||||||||||||| ||||| || ||||| | |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15886 GCCTATTTCGTGGCGCCTGAGCCGGGTGAGGAC 15918 |||||| | || ||||| || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190070983459500