Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004683.1 Length=57050 Score E Sequences producing significant alignments: (Bits) Value seq49917 196 2e-45 seq46136 168 2e-37 seq46163 140 1e-28 seq50019 113 2e-20 >seq49917 Length=2087 Score = 196 bits (216), Expect = 2e-45 Identities = 523/788 (66%), Gaps = 21/788 (3%) Strand=Plus/Plus Query 16215 CGGCATCTGGGACATTCTCAACTACCTGACGATTCTGCCGTCGTGGTTCCTGCCGATA-C 16273 |||||| |||||||| || |||||| ||| |||| |||||| || || | | Sbjct 210 CGGCATTTGGGACATCCTGAACTACTACGTGATCTGGCCGACGTGGTGGCTTCCCCTTGC 269 Query 16274 AGCTGCAGCCGTTCTCCCACGCCGTGTTCGTAGGCCCGCTGGTGACGGTGATCGAGAACA 16333 || ||||| | || ||||| | ||| | | |||| ||| | ||||||| Sbjct 270 CGCC-CAGCCCATTTCGCACGCAATCTTCATCTGGGCGCTACCGACCTGCGTGGAGAACA 328 Query 16334 TGATCTCCGAGTGCGCGCTGCGTATCCAGGGCGGCATCAACGAGTTCCTCAACAACGCGT 16393 || || |||| ||||||||||| |||||| ||| |||||| |||||||||| Sbjct 329 TGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGGCTGGAGTTCGTCAACAACGCCC 388 Query 16394 TGTCGCT-----GAATCCCGATGTGCGCGCCTGGTTCGGATCGATCCTGACCGCGATCGA 16448 |||| || ||| ||| | || || ||| | || | ||| || || || | Sbjct 389 TGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGGGCACCATCTTGCAAGCCCTCAA 448 Query 16449 GCGCGACGGGCTCAACCCGCAGGCGCTGCTGGA-GATGCTCAAGACGCCCATGTACGTGG 16507 ||||||| |||| |||| | || | | | |||||| || |||| || ||| Sbjct 449 GCGCGACAAGCTCTCGGTGCAGAC-CTTCGGCAAGATGCTGCGCACCCCCACCTATGTGC 507 Query 16508 TGCGCACCAACCCGTTTTTCGACGGGTCACCGGGCGTG-GCCAAGACGGTTCGCATGGAG 16566 ||||||||||||||| | ||| || || ||| |||||||| ||||||||||| Sbjct 508 AGCGCACCAACCCGTTCCTGGACACATCGCCCAT-GTGCGCCAAGACCGTTCGCATGGAA 566 Query 16567 TCGTGCGGCACAACGATTCGCGACCTGACGAAAGCCTATGGCGTCGATGTGCGGGTCGAC 16626 | ||||| || || || | || ||||| || || || || | ||| Sbjct 567 ACCTGCGGAACGGTCATCAAGGATGTCACCCGCGCCTACGGTGTGGACACCCGCATGGAC 626 Query 16627 CTGTGGCGGCCGGGGGATCCGCAGCCAGACCGGTGGGCGAACCTGACCAAGCCGACGTAC 16686 |||||||| ||||| || ||||| || ||| |||||| ||||| ||| || ||| Sbjct 627 CTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCCAACCTCGATTCGCCCACCTAC 686 Query 16687 GTGGTGACCGTCAAGGACCGCTCGCAGATCTCGGGCCCGACGAAGACGGTCCTGGACTCG 16746 ||| | || | ||||||| |||||||||||| || || || || || || ||| Sbjct 687 GTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCG 746 Query 16747 ATCTTCCGCACGACCGTG---GATCTCGGTGGCTCACTCGGCGACATCTTTTGGCCGATC 16803 | || | ||| ||| || ||||| || |||||||| |||||||| ||| || Sbjct 747 GTGATC---AAGACGGTGATCGACCTCGGCGGATCACTCGGTGACATCTTCAAGCCAGTC 803 Query 16804 ATCCGCCAGGT--CCAGTCGATGCCGGGCGTGTACGAGGCCCCCTCGCTGGGTGTGAACT 16861 |||| ||||| || || ||| || |||| | | |||||| ||| ||||| | | Sbjct 804 ATCCAGCAGGTACCCGGT--ATGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGATT 861 Query 16862 TCACCGAACCGTACGCGATCGTCGTCGCGCCCGAGCCGGGCGAGGACTCGCCGCTGGTGT 16921 || | || ||||| ||||||||| ||||| |||||||||||| | | Sbjct 862 TCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCATCA 921 Query 16922 CGTGCAAGATCACCGACCACACACCCAAGGCGTGGCAGATCATCATCGGGGGACGATCGC 16981 ||| | ||| |||||||||| ||| ||| ||||| ||||||||| || || || | Sbjct 922 ACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTCTC 981 Query 16982 CCAAATGG 16989 | || ||| Sbjct 982 CAAAGTGG 989 >seq46136 Length=4795 Score = 168 bits (186), Expect = 2e-37 Identities = 297/424 (70%), Gaps = 23/424 (5%) Strand=Plus/Minus Query 9757 TACGCCAAGTTCCTCAAAGCGGGATTCGCCCCCGGCCAGATCAACACGACCTGGCAGGTG 9816 ||||||||||||||| || || | ||||| |||||| | ||| |||| ||||| Sbjct 2756 TACGCCAAGTTCCTCGCTGCCGGCGGTGTTCCCGGTCAGATCGATACGCACTGGAAGGTG 2697 Query 9817 ATGGCCAAGCAGCTGGAGGATCGGCGCCGAGC-CGACTCGAAAAGTTCTTGAGGCGGTCG 9875 ||| ||||||||||| ||| | || |||||| |||||| ||||||| || | Sbjct 2696 ATGCAGCGCCAGCTGGAGGAGCGGA-CAAAGATCGACTCCAAAAGTAATTGAGGCAGTAG 2638 Query 9876 CGCTGTGGTGCCGCTACCCCGATCAGATCGAATCTGACCTCAAGATCCATT--GCCATG- 9932 ||||||||||||| | ||| || |||||| | || || || || || || Sbjct 2637 CGCTGTGGTGCCGTTGGCCCAATGCGATCGAGGCCGATCT-----TCGTTTTCGCGGTGT 2583 Query 9933 GCACCGATATTCGGTGGT-GGCACCGCGGCGACCGTGACGAGCGGGGCTGCCTGAAGCTG 9991 || | ||| || | |||||| ||| ||| || ||||| ||| |||| ||| Sbjct 2582 GCGCA-----TCGCTGATTGGCACCAGGGCACCCGCGATGAGCGCGGCGCCCTGGTGCTT 2528 Query 9992 TCGAGTCGACTGCTGCTCAACCTGATTCGCGGGCTGCCCGAAGATTCCGAATTCAAGACT 10051 || || || | || || ||||| | | |||||||||||| || || ||||| || Sbjct 2527 TCCAGCCGCCAACTACTGTCGCTGATCCACCAGCTGCCCGAAGACTCAGAGTTCAAAACC 2468 Query 10052 CA--CGCCGCCGAGCCGTTCGGCCGCGGCGGCGACTGGTCGATCCTCAAGAAGATGACCG 10109 || |||||||| ||||| ||| ||||||| ||| || || | ||||||| | || Sbjct 2467 CAAGCGCCGCCG--CCGTTTGGCGCCGGCGGC---TGGACGGTCATGCAGAAGATCATCG 2413 Query 10110 CAGCCCTGCATAACGAGGTCGCGGCCTACCGCGCCAGCAAGTACGCCGGCACCCCACACG 10169 | | || |||||| ||||||| ||||| |||||||||||||| |||||||| |||| Sbjct 2412 CCGAGACACACAACGAGCTCGCGGCATACCGGGCCAGCAAGTACGCGGGCACCCCGCACG 2353 Query 10170 AGTA 10173 | || Sbjct 2352 AATA 2349 >seq46163 Length=1271 Score = 140 bits (154), Expect = 1e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 22654 ATGTCTGAATATCAGGCCGCCCATCGACGCGCGTGCGCCGAGGTGATCACCGCGCTTGGC 22713 ||||| ||||| || || | || |||||||| ||| || | |||||||| || ||| Sbjct 227 ATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCCGCAATCACCGCACTCGGC 286 Query 22714 AACAGGATCGGGCTCTACGCCGGTTCGACGCGCGTCGGCACCGTATCAGCGGACACTACC 22773 ||| | |||||||| | ||||||||| || || || ||||||| | || ||||| ||| Sbjct 287 AACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCACC 346 Query 22774 TGGGGTGCAGCCGCCGACATCACCGAGGGCGGCATCGACAAGGCTCAAGTTACCGGATCG 22833 |||| | | | ||| ||||||| ||||||||||||||| | ||||| ||| Sbjct 347 TGGGCCACCCCAGTCGATGTCACCGAATCCGGCATCGACAAGGCATCATCCACCGGCTCG 406 Query 22834 ACAGTCACAATCACGATTCCAGGCGGCACCGTATCGAACGGTACGGCCATCGACCGATAC 22893 || || ||| || | || ||||||||||| | ||||| |||| ||| |||| ||| Sbjct 407 CTGGTAACCATCTCGGTACCTGGCGGCACCGTGGCCAACGGCACGGTGATCAACCGGTAC 466 Query 22894 GG 22895 || Sbjct 467 GG 468 >seq50019 Length=220 Score = 113 bits (124), Expect = 2e-20 Identities = 130/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 3740 CGACGGCCTCACCCTCGACGGCTACGGCGCGGTGTTCAAC-CGCCTCACCGTCATCGACA 3798 ||||||||||||| | || ||||||||||||||||||||| |||| |||| |||||| Sbjct 170 CGACGGCCTCACCTTTGAAGGCTACGGCGCGGTGTTCAACTCGCC-CACCCGGATCGACT 112 Query 3799 GCTACGAGGGCAAGTTCCGCGAGAAGATCGCCCCTGGCGCGATGAAGCGGTCGTTCCGCG 3858 || || |||| ||| || ||||||| || || ||| | |||| | |||| Sbjct 111 CCTGGGAAGGCACATTCGATGAACAGATCGCACCCGGTGCGTTCCGTAAGTCGCTTCGCG 52 Query 3859 AGTCGC-CGCCCAAGGTGCAGTTCGACCACGGCCGCCACCCCATGATCGG 3907 || ||| | |||||| | |||||||||||||| | ||||||| ||||||| Sbjct 51 AG-CGCACACCCAAGTTCCAGTTCGACCACGGACACCACCCCCTGATCGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182328452358000