Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_004685.1 Length=69777 Score E Sequences producing significant alignments: (Bits) Value seq49917 338 3e-88 seq50663 221 5e-53 seq38559 140 1e-28 >seq49917 Length=2087 Score = 338 bits (374), Expect = 3e-88 Identities = 724/1080 (67%), Gaps = 54/1080 (5%) Strand=Plus/Plus Query 34911 GGCGCGTGGGTGGGCACCGCGCAGCTGCTCGGCATCTACGACATCCTCAACTACATCGTC 34970 ||||||||| |||| | || ||| |||||| | |||||||| |||||| ||| Sbjct 181 GGCGCGTGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTG 240 Query 34971 ATCTGGCCGACGTGGTGGCTGCCGCTGGCCGCGCAGCCGTTCTCCCACGCCATCTACATC 35030 |||||||||||||||||||| || || ||||| ||||| | || ||||| |||| |||| Sbjct 241 ATCTGGCCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATC 300 Query 35031 GGCGGGCTGTGCACCTGCATCGAAGCGATGATCATGGAGAACTCGCTGCGGCTCCAGTC- 35089 | | ||| |||||| | || ||| || || | ||||||| ||||||| Sbjct 301 TGGGCGCTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCC 360 Query 35090 GGGCATCTGGGAGTTCGTCAACAACGTGGTGTCGCTC-----AACCCTGACATGCGCGCC 35144 ||| |||| ||||||||||||||| |||| ||| ||| ||||| || || Sbjct 361 GGGTGGCTGG-AGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCA 419 Query 35145 TGGATTGGCACGCTGCTTCAGTCG---AACGGCAACAT---------------CTTCGAC 35186 ||||| ||||| | | || | || || ||| ||||| | Sbjct 420 TGGATGGGCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGC 479 Query 35187 A---TGCTGAAGACGCCCATCTACGTGGTGCGCACCAACCCGCTGCTCGATACGAGTCCG 35243 | ||||| || |||| ||| ||| ||||||||||||| | || || || || Sbjct 480 AAGATGCTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCC 539 Query 35244 CTGGTCGCGCGCACGGTGCGGATGGAGACGTGCGGCGCTGTCATCGACGACATCACCCGC 35303 || ||| || || || ||||| || ||||| | |||||| | || |||||||| Sbjct 540 ATGTGCGCCAAGACCGTTCGCATGGAAACCTGCGGAACGGTCATCAAGGATGTCACCCGC 599 Query 35304 GCCTACGGGGTGACGGTGAGCGTGGACCTGTGGCTGCCGGGCGACGAGCAGCCGGACTAC 35363 |||||||| ||| || |||||||||||| ||||| ||| ||| |||||| | Sbjct 600 GCCTACGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAG 659 Query 35364 TGGACCAAGAACTTCGCGTCGATGCGGCTCACTCAGCCGACGTACGTGGTGACCGTCAAG 35423 ||| |||| | ||||| || || || |||||| | || | | Sbjct 660 TGGGCCAA--------CCTCGATTCG----------CCCACCTACGTGTTTTCCACCCGG 701 Query 35424 GACCGCTCGCGGATCACCGGCCCGACCGGCACGGTGATCGACTCGGCGGTGCGTCAGGTG 35483 |||||| || |||| | || || ||| || || ||| |||| | | |||| Sbjct 702 GACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTG 761 Query 35484 GTCGACGTGGCCGGGTCGTTCTTTGGTGACCTGCT---GCCGATCATTCAGAAGGTGCCA 35540 ||||| | | ||| || || |||||| | | ||| |||| ||| |||| || Sbjct 762 ATCGACCTCGGCGGATCACTC---GGTGACATCTTCAAGCCAGTCATCCAGCAGGTACCC 818 Query 35541 GGTCGCGACGGGGTGTACATCTCCGAGCAGCTGGGCGTCGACTACGTGGGGCCGTGGGCA 35600 ||| ||||||||| | | || |||| || ||||| | || | ||| | || Sbjct 819 GGTATGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGATTTCGAGCAGCCCTACGC- 877 Query 35601 CTGC-TGATCGCGCCCGAGCCGGGGGAGAAGGGCAACGTCGTCACCTGCCGGATCAGCTT 35659 || | | |||| ||||| ||| ||| | |||| || ||| |||| ||| | Sbjct 878 CTACGTCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCATCAACTGCGAAATCGCCGA 937 Query 35660 CCACACGCCGAAGGGCTGGCAGCACATCATCGGCGGTCGCAGTCCGAAGTGGCTCAACGA 35719 |||||| || |||||||||| |||||||||||||| || ||| |||||| | ||||| Sbjct 938 CCACACCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGA 997 Query 35720 CCTGATGAACGCGACATTCTCCTGGATGATCGACGCGCTCTCGATCCTGATCGGTTTCAC 35779 | | ||||| || || ||| | || ||| | |||| |||| || |||| ||| | Sbjct 998 CTTAATGAATGCCACCTTCGCAGGGTGGATGTATTCGCTGATGATCGTGGTCGGGTTCTC 1057 Query 35780 TGGAATCCCCAGCAACCTGCTGGAGGGGTTCATGAACAACACCCTGCTGGCGTTCCAGCT 35839 || ||||| | ||||| ||| ||| ||||||||| | | |||||||||||| | Sbjct 1058 CGGCATCCCGTCGGATCTGCTCTCGGGATTCCTGAACAACAGCTTCCTGGCGTTCCAGAT 1117 Query 35840 GGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCCTGGCATCGAGGTGTT 35899 ||| ||| ||| | ||| ||||||| ||||| | ||| || | |||||| ||| Sbjct 1118 GGTCCAGGTGTACCAGGTCCGCGACGAGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTT 1177 Query 35900 CCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGGCTTCATCAACGCCAT 35959 | || |||| ||||||||||||||||||||||| || |||||| ||||||||||| || Sbjct 1178 CTACCCGACCGCCAGCGCCCCGTACAACATCGAAACCATGTTCGCGTTCATCAACGCGAT 1237 >seq50663 Length=1982 Score = 221 bits (244), Expect = 5e-53 Identities = 324/456 (71%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 35646 TGCCGGATCAGCTTCCACACGCCGAAGGGCTGGCAGCACATCATCGGCGGTCGCAGTCCG 35705 |||||||||| | ||| || || |||| ||||||||||||||||| || || || || Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 35706 AAGTGGCTCAACGACCTGATGAACGCGACATTCTCCTGGATGATCGACGCGCTCTCGATC 35765 |||||| | |||||| ||||||| || || ||| | ||| ||||||| |||| |||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 35766 CTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGGGTTCATGAACAACACCCT 35824 || |||| ||| | || ||||| | || ||||||| || ||| ||||||||| | | Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTT 1628 Query 35825 GCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGAGGTCGGCCCGTATCACCC 35884 ||||| |||||||| ||||| |||||| || ||| |||| |||||||| || ||||| Sbjct 1629 CCTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCC 1688 Query 35885 TGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAACATCGAGACGGTGTTCGG 35944 | ||||| ||| | | || || ||||| ||||||||||| || || |||| Sbjct 1689 AGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGC 1748 Query 35945 CTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGCGATCGTGACGTTCCGCAA 36004 |||||||||||| | | ||||| | |||| | || || ||||||||||| Sbjct 1749 GTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAA 1808 Query 36005 CGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGGGCTGATCTCTCTTCTTTA 36064 || || ||| || | || | || || ||||||||||| |||| || | | || Sbjct 1809 TGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTA 1868 Query 36065 CATGGAGAGGACGCGAATCTTCACCGACTACATCGA 36100 | | | || || |||||||||||||||| Sbjct 1869 CCACGGCCGAACCAAGATGGTCACCGACTACATCGA 1904 >seq38559 Length=768 Score = 140 bits (154), Expect = 1e-28 Identities = 218/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 35748 ATCGACGCGCTCTCGATCCTGATCGGTTTCACTGGAATCCCCAGCA-ACCTGCTGGAGGG 35806 ||||| ||||| |||| || |||| ||| | || ||||| | || ||||||| || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCC-ATCAGACCTGCTATCCGG 447 Query 35807 GTTCATGAACAACACCCTGCTGGCGTTCCAGCTGGTGCAGAACTACGCGCGGCGCAACGA 35866 ||| ||||||||| | | ||||| |||||||| ||||| |||||| || ||| |||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 35867 GGTCGGCCCGTATCACCCTGGCATCGAGGTGTTCCACGCGACGGCCAGCGCCCCGTACAA 35926 |||||||| || ||||| | ||||| ||| | | || || ||||| ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 35927 CATCGAGACGGTGTTCGGCTTCATCAACGCCATGTGGGATTCGCGCGGCTGGGTGTCGGC 35986 |||||| || || |||| |||||||||||| | | ||||| | |||| | || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 35987 GATCGTGACGTTCCGCAACGGCGAGGTGTACACCCTCGGCAAGGATGTCTTCAAGGGCGG 36046 || ||||||||||| || || ||| || | || | || || ||||||||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 36047 GCTGATCTC 36055 |||| || Sbjct 688 ATTGATGTC 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223023571063500