Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq47707 84.2 1e-11 seq472 82.4 5e-11 >seq47707 Length=6282480 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||||||||||||| | | || Sbjct 1043806 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1043747 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| ||||| || ||| || | | |||||| || | || || ||||| || || Sbjct 1043746 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1043687 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | || |||||| ||| || || | | |||| ||| || || || || || Sbjct 1043686 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1043627 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || ||||||| |||||| ||||| || Sbjct 1043626 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCATCTT 1043591 >seq472 Length=1492349 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/225 (68%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||||| | | ||| Sbjct 1223270 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCGTC 1223211 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| || || ||| ||| || | | |||||| || | || || |||| || || Sbjct 1223210 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGGAATTTCTTCCTTATC 1223151 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | || |||||| ||| || || || |||| ||| || || || || Sbjct 1223150 CTGGATTTTGGC---TTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGAT 1223094 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGT 33378 || || || || || |||||||||||||| ||||| || |||| Sbjct 1223093 GGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCATCTTGGTGGT 1223049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318580431073500