Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq48864 241 1e-58 seq75 111 1e-19 seq199 95.1 1e-14 >seq48864 Length=438413 Score = 241 bits (266), Expect = 1e-58 Identities = 504/744 (68%), Gaps = 9/744 (1%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 |||||||||| ||| | ||||| || | ||||| || ||||| ||||| || |||| Sbjct 419722 TTGACATAACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 419781 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT--T 12960 |||| | ||||||| |||||||| || || |||||| | || | | | | Sbjct 419782 CTTCCAGTAAAATATTCTCCATAAAGTCAAATGGATTT--CCTACTCTGAAAACCTCGCT 419839 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | ||| || | | ||| | ||||||||||| |||||||| ||||| || | Sbjct 419840 AAATCCCAGTTCCAGCATAAGTCTATTGGCAACAAACTCAATGTACTGCTTCATCAAG-C 419898 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA-TAT 13079 |||||||| | || | || ||||||| ||| ||||| | || | | ||| | | | Sbjct 419899 GCAGTTCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCT 419958 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCT 13139 || || | ||||| || ||| | | | | |||||| ||| | | || | | Sbjct 419959 TGACAGCATTGATAATGATTTCTTTCACTCTCTGCTCTAACGGATAGTGTAGCAGGCGTT 420018 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 | ||||||| | |||| || |||||| || | |||||||| || || || || || | Sbjct 420019 TGAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGG 420078 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 ||||||| ||||| ||||| || | ||||| || | ||| ||||| |||||||| | Sbjct 420079 AAAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGC 420138 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CT 13317 | | ||| || |||||||| ||||||||||| |||| | | ||| ||||| ||| || Sbjct 420139 CAGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCT 420198 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 ||| | | | ||||| |||||| | ||| | | || || || ||| | Sbjct 420199 CCTTTGTC-CCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGT 420257 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || | || | | | | |||| || ||| ||| ||||| || || | Sbjct 420258 TTCAATGGCACTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAG 420317 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 || ||||||||||| ||| | || |||||||| || |||||||| ||||| ||||| | Sbjct 420318 GAAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCG 420377 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 || |||| | | |||||| | ||||| || | | |||||| || || || || Sbjct 420378 GGCTTCTGTAATGTCAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCC 420437 Query 13558 GTCACTAGCAGCaaaaaaaGCAAG 13581 |||| || |||| ||||| || Sbjct 420438 ATCACATGCTACAAAGAAAGCCAG 420461 Score = 237 bits (262), Expect = 1e-57 Identities = 503/744 (68%), Gaps = 9/744 (1%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 |||||||||| ||| | ||||| || | ||||| || ||||| ||||| || |||| Sbjct 414799 TTGACATAACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 414858 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT--T 12960 |||| | ||||||| |||||||| || || |||||| | || | | | | Sbjct 414859 CTTCCAGTAAAATATTCTCCATAAAGTCAAATGGATTT--CCTACTCTGAAAACCTCGCT 414916 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | ||| || | | ||| | ||||||||||| |||||||| ||||| || | Sbjct 414917 AAATCCCAGTTCCAGCATAAGTCTATTGGCAACAAACTCAATGTACTGCTTCATCAAG-C 414975 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA-TAT 13079 |||||||| | || | || ||||||| ||| ||||| | || | | ||| | | | Sbjct 414976 GCAGTTCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCT 415035 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCT 13139 || || | ||||| || ||| | | | | |||||| ||| | | || | | Sbjct 415036 TGACAGCATTGATAATGATTTCTTTCACTCTCTGCTCTAACGGATAGTGTAGCAGGCGTT 415095 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 | ||||||| | |||| || |||||| || | |||||||| || || || || || | Sbjct 415096 TGAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGG 415155 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 ||||||| ||||| ||||| || | ||||| || | ||| ||||| |||||||| Sbjct 415156 AAAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGA 415215 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CT 13317 | | ||| || |||||||| ||||||||||| |||| | | ||| ||||| ||| || Sbjct 415216 CAGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCT 415275 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 ||| | | | ||||| |||||| | ||| | | || || || ||| | Sbjct 415276 CCTTTGTC-CCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGT 415334 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || | || | | | | |||| || ||| ||| ||||| || || | Sbjct 415335 TTCAATGGCACTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAG 415394 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 || ||||||||||| ||| | || |||||||| || |||||||| ||||| ||||| | Sbjct 415395 GAAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCG 415454 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 || |||| | | |||||| | ||||| || | | |||||| || || || || Sbjct 415455 GGCTTCTGTAATGTCAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCC 415514 Query 13558 GTCACTAGCAGCaaaaaaaGCAAG 13581 |||| || |||| ||||| || Sbjct 415515 ATCACATGCTACAAAGAAAGCCAG 415538 >seq75 Length=11204613 Score = 111 bits (122), Expect = 1e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || |||||||| || || ||||| || |||||||| || Sbjct 8448222 TCATCTCTGCTAATCAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8448281 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | |||||||| || ||||| || |||||||| ||||||||||| ||| Sbjct 8448282 AGCCAGAATATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 8448341 Query 13295 ATCAAC 13300 | |||| Sbjct 8448342 A-CAAC 8448346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | ||||||||||| ||||| || |||||||| || ||||| Sbjct 8452284 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8452343 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || ||||||||| Sbjct 8452344 GAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTC 8452382 >seq199 Length=4383281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/142 (76%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 13168 CAATCCTT----CATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223 |||||||| ||||||| || || || || || ||||| || || || |||||||| | Sbjct 4204752 CAATCCTTACCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGAC 4204693 Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG 13283 ||| || || | ||| |||||||||||||| || || || || || |||||||| || | Sbjct 4204692 CTCTCTTCTTCAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAG 4204633 Query 13284 CTGCAAACGCTATCAAC-CTTT 13304 | ||||| || | |||| |||| Sbjct 4204632 CAGCAAAGGCCA-CAACTCTTT 4204612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| || ||||| || |||||||||||||||||| |||| |||||||| || | Sbjct 4213845 AATCTGTCTGCTACAAATTCAATGTACTGTTTCATTAAAACACAATTCATTCCAATGAGG 4213786 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 4213785 CCAACAGGCAAGGCTTCTGTTAAAAA 4213760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| || ||||| || |||||||||||||||||| |||| |||||||| || | Sbjct 4215987 AATCTGTCTGCTACAAATTCAATGTACTGTTTCATTAAAACACAATTCATTCCAATGAGG 4215928 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 4215927 CCAACAGGCAAGGCTTCTGTTAAAAA 4215902 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATTT 12860 ||||||||| ||| | | ||| |||| ||| || || | || |||||| | | Sbjct 4235057 TTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTT-TCTGCCATAACTGCAAAAC 4234999 Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||| Sbjct 4234998 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTT 4234939 Query 12921 CCATAAAATCGAAAGGATTTT 12941 |||||||||| || ||||||| Sbjct 4234938 CCATAAAATCAAAGGGATTTT 4234918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430715830651500