Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq598 129 4e-25 seq388 95.1 8e-15 >seq598 Length=3788045 Score = 129 bits (142), Expect = 4e-25 Identities = 391/600 (65%), Gaps = 27/600 (5%) Strand=Plus/Plus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACG-TGATCCAGGTA 25447 ||||| ||||| || || |||| |||||| | ||| | || || | |||| |||||| Sbjct 455291 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGTGGCTCAGCCATGATTCAGGTA 455350 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 || | |||||||| ||| || ||||| || || || || | || | || || Sbjct 455351 ACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGC 455410 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTT-AAAGG-GTACCCCGAACCCCATG 25565 ||||| |||||||| | |||||||| ||||| ||||| || ||| | ||| | | Sbjct 455411 AATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTC 455470 Query 25566 TCCCC----CCGACCTCTGG----TAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAA 25617 |||| |||||||| | |||||||| || || ||||| |||| |||| | Sbjct 455471 TCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAG 455530 Query 25618 AACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAG 25677 ||||| || | | || || ||||| | || || || | |||| || ||||| Sbjct 455531 AACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAA 455590 Query 25678 GCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGC 25737 || || ||||| | ||||| || || ||| | ||||| || |||||| Sbjct 455591 GCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTGATAGTGTCAATCACTTTTTGC 455650 Query 25738 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 25797 || || || || ||| || ||||||| |||| | |||| ||||| || ||| Sbjct 455651 AGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAA 455710 Query 25798 TACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC 25857 | ||||||||||| || || || || || | ||| || ||||| ||| || ||| Sbjct 455711 TGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCTTCTTCTCTGGTGGAGAATCCC 455770 Query 25858 CTCTTATCCAAAAAGTC------TC--TGGA--------ACCATTGGCGTCCCAGATCTT 25901 | ||||||||||| || || | | ||||| | |||||||| || Sbjct 455771 AGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAGATCATTGTCATCCCAGATTTT 455830 Query 25902 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 || ||||| || || | || | ||||||||| || ||| ||||| |||| ||| Sbjct 455831 CACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAACCAAAGCAACTC 455890 >seq388 Length=3990105 Score = 95.1 bits (104), Expect = 8e-15 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| ||||||||||| || || || || || | ||| || |||| Sbjct 2992999 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2992940 Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900 | ||| || ||| | ||||||||||||| || |||||||| |||||||| | Sbjct 2992939 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2992880 Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 | || ||||| || || || |||| ||||||||| || Sbjct 2992879 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2992840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || ||||| |||||||| || |||||||| ||||| ||||| || || | |||||| Sbjct 2997457 GCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCCATG 2997398 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||||||||| || || ||||| | || |||||| ||||| || Sbjct 2997397 TCTCCT-GACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACCACGTAGAACTGGCA 2997339 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | | | ||| ||||| || || || || Sbjct 2997338 GAGCGCATGGCATGGAGGCAGCGCCATCAG 2997309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339927219579750