Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq347 89.7 4e-13 seq472 86.0 5e-12 >seq347 Length=5549683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| ||||| | |||||| ||| ||||||||| |||||||| |||| Sbjct 1107942 ACCACCACGAAGCCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1107883 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | | | || | || |||| |||||| || | |||| | | |||||||| | Sbjct 1107882 CAGAGTAT-GCCCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAG 1107824 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || ||| || ||||| || | | |||| ||||| | || || Sbjct 1107823 GAATTCCTTTCTTACCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAAGGTTCAA 1107764 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || ||||| ||||| ||||||||||||||| || Sbjct 1107763 CCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTTG 1107711 >seq472 Length=1492349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| ||| ||||||||| |||||||| |||| Sbjct 1223285 ACCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1223226 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| ||| |||| |||| ||| || || | |||| | | |||||||| || Sbjct 1223225 CAAAGTACGCCCGTCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGAAGG 1223166 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | |||||| ||| ||||| || | | |||| ||||| | | || Sbjct 1223165 AATTTCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAAC 1223106 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || ||||| ||||| || |||||||||||| || Sbjct 1223105 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCATCTTG 1223054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420990649550750