Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq39882 141 1e-28 seq348 91.5 2e-13 >seq39882 Length=1284669 Score = 141 bits (156), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || ||||| | |||| |||||||| || | || | |||| ||| Sbjct 1023833 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATT 1023774 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| || || ||||| |||||||||||||| |||||||| | || || ||||| Sbjct 1023773 TTAAAACCTACTTCTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGAGAACAGATAGGA 1023714 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| ||||||| ||| Sbjct 1023713 TTACCCATCAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCACCAAAG 1023654 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||||| || || ||||||||||||| | | | |||| ||||| || || ||| Sbjct 1023653 ATGGCGTCTGGGCGTGGCTTTTCCACCAGCAGGGCTGGATACAGCTCCATGGCATCAATG 1023594 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || || | || | || |||||||| ||||||| Sbjct 1023593 TCACCATACAGTGCTTCCAACTCCGTGGCCATTTCCTTCTCTCCTG 1023548 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 || |||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||| Sbjct 1020416 CTCACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCCGTCTTGAAA 1020357 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || ||||| || || |||| || | |||||| | || ||||| || ||||| Sbjct 1020356 AACTGATGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCTTGAGGATCA 1020297 Query 10149 GGAGTGAA 10156 || |||| Sbjct 1020296 GGGATGAA 1020289 >seq348 Length=1967584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || || ||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 370150 CTCACGCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 370207 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||||||||| | Sbjct 370208 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGGGGT 370267 Query 10147 CGGGAGTGAAGGTCCTCC 10164 |||| |||| |||||| Sbjct 370268 CGGGTATGAACTTCCTCC 370285 Score = 87.8 bits (96), Expect = 3e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || || ||||| || |||||||| |||| || |||||| || | | || || Sbjct 359474 CCACCAAATGTGCTTGGCTTCCAGTACTCCGGAGAACAGATGGGATTTCCTAGAAGACCC 359533 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || || ||||| ||||| || | ||||| || ||||| || ||||| | ||| || || Sbjct 359534 TTAAGAGAAAAGGGAGCACCAATCTCGATCATACTCTCCCCAAAGATAGAGTTTGGTTGG 359593 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 |||||| | | || || | ||| ||||||| || ||||||||||| || Sbjct 359594 CACTTTTCGAGAAGCAACCCTGGGTAGAACTCCAAGGCATCGATGTCTCCATA 359646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708075329580000