Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq42965 127 2e-24 seq436 122 8e-23 seq44605 87.8 2e-12 seq44217 86.0 6e-12 seq43265 86.0 6e-12 seq290 84.2 2e-11 >seq42965 Length=562198 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 || ||||| ||||| |||| || ||||||| ||| || || || || | ||| || || Sbjct 301181 ACACCTCCCCTCAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCA 301240 Query 94838 CTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 || ||| ||| ||||| ||||| || ||||||| || || ||||| || ||| Sbjct 301241 GACAGGGTGCGCCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGA 301300 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || |||||||| ||||| | || || ||||||||| | | |||||| | | || Sbjct 301301 GGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 301360 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 301361 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301410 Score = 122 bits (134), Expect = 8e-23 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || | | ||| ||| Sbjct 302570 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCTTCC 302629 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| || || ||||| || ||||| |||||||| ||||| | Sbjct 302630 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 302689 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | |||||| | | ||||| || | |||||||| || Sbjct 302690 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 302749 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT----GCTTACAACATA 95019 ||||| || || || || ||||||||||| |||||||||| Sbjct 302750 CCAGTTAGGGTCTTTACGAAGATCTGCATTATCTGTTACAACATA 302794 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || | | ||| ||| Sbjct 301430 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCTTCC 301489 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| || || ||||| || ||||| |||||||| ||||| | Sbjct 301490 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 301549 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | |||||| | | || || || | |||||||| || Sbjct 301550 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 301609 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 301610 CCAGTCAGGGTCTTCACGAAGATCTGCAT 301638 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || | | ||| ||| Sbjct 301658 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCTTCC 301717 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| || || ||||| || ||||| |||||||| ||||| | Sbjct 301718 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 301777 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | |||||| | | || || || | |||||||| || Sbjct 301778 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 301837 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 301838 CCAGTCAGGGTCTTCACGAAGATCTGCAT 301866 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || | | ||| ||| Sbjct 301886 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCTTCC 301945 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| || || ||||| || ||||| |||||||| ||||| | Sbjct 301946 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 302005 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | |||||| | | || || || | |||||||| || Sbjct 302006 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 302065 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 302066 CCAGTCAGGGTCTTCACGAAGATCTGCAT 302094 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || | | ||| ||| Sbjct 302114 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCTTCC 302173 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| || || ||||| || ||||| |||||||| ||||| | Sbjct 302174 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 302233 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | |||||| | | || || || | |||||||| || Sbjct 302234 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 302293 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 302294 CCAGTCAGGGTCTTCACGAAGATCTGCAT 302322 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || | | ||| ||| Sbjct 302342 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGTCCATCTTCC 302401 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| || || ||||| || ||||| |||||||| ||||| | Sbjct 302402 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 302461 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | |||||| | | || || || | |||||||| || Sbjct 302462 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 302521 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 302522 CCAGTCAGGGTCTTCACGAAGATCTGCAT 302550 >seq436 Length=2687165 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| |||||| || || || | ||| || || Sbjct 806593 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806652 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || ||||| Sbjct 806653 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 806712 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || | | |||||| | | || || Sbjct 806713 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACC 806772 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| ||||| ||||||||||||||||| Sbjct 806773 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 806819 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| |||||| || || || | ||| || || Sbjct 806365 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806424 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || |||||||| ||||| Sbjct 806425 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGG 806484 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || | | |||||| | | || || Sbjct 806485 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 806544 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 806545 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 806591 >seq44605 Length=175201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || || || ||| | ||| |||| |||||| || Sbjct 660 GTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATCTTCCAACTGTTTGCCA 719 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || | |||||||||||| |||||||| ||||| || | | ||||| || || Sbjct 720 GCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCCTGGATTTTGGCTTTT 779 Query 94931 ACGGCGCCGACAGTGT-CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | | || | || | | || || || | |||||||| || || ||||| || Sbjct 780 ACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGATGGTCTTCCCTGTAAGGGT 839 Query 94990 TTTCACAAAGATCTGCAT 95007 ||| ||||| |||||||| Sbjct 840 TTTTACAAAAATCTGCAT 857 >seq44217 Length=341162 Score = 86.0 bits (94), Expect = 6e-12 Identities = 203/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || ||||||| | ||| |||||| | || ||||||||||||||| || |||| ||| | Sbjct 123245 GAACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTGCAATTCGGTCAC 123186 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 | | || | ||| | | || | || ||||| || || || || ||||| | Sbjct 123185 CTTTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTC 123126 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 |||| ||||| ||||| || || || ||||| |||| ||| | | |||||||| | Sbjct 123125 TATAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTGCAGCCAAGCCAG 123066 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | || || || |||||| || ||| | |||| | | ||||| || || | Sbjct 123065 AACATGGAGCTACTCTTCCATAACACCCAGAAGGAAGAGCTATCTGAATGTCAGTCTTCA 123006 Query 43849 CGA-GGCTGTAGCCTTTG--GGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACC 43905 | | |||| | || | | || || || |||| | ||| |||||||| ||||| | Sbjct 123005 CAAGGGCTTTCTCCATAGGTGGCACTGTG---TAATCATAGGCACTGTACAGGTCGTAGC 122949 Query 43906 CGGC 43909 | || Sbjct 122948 CCGC 122945 >seq43265 Length=2440742 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||| ||||| || | || || || || || | |||||| || Sbjct 2202530 CCGCCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAA 2202589 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| |||| || | | ||||| | || || Sbjct 2202590 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTGGGTGGG 2202649 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| |||||||| ||| |||||| | | ||| Sbjct 2202650 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGACC 2202709 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | |||||||| || || || || || ||||| ||||||||||| Sbjct 2202710 TTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2202756 >seq290 Length=9387618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| ||| | |||| ||||||| | ||| || || | || ||| || Sbjct 7872208 TTAGACACCTCCCCTCTAGCGCAGGGCCAAGTGTAGAGTTGACTCTCTCTGGTTGTTGTA 7872149 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| || |||| ||| |||||||||| ||| || ||| | ||| ||||| || Sbjct 7872148 GTCGGACAGGGTGTGCCCATCTCCCAGCTGTTTCCCGGCAGAGACTGGTCTCTGCTGGTC 7872089 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || ||||| || || | || || || ||| | | |||||| | | Sbjct 7872088 AGGGGGGATGCCTTCCTTATCTTGGATCTTCGCTTTGGCATTCTCAGTGGTGTCACTGGG 7872029 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||| |||||||| || ||||| | || |||| ||||||||||| Sbjct 7872028 CTCGACCTCAAGGGTGATGGTCTTGCCAGTCGGGGTCTTCATGAAGATCTGCAT 7871975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448006815270000