Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq48864 165 9e-36 seq199 96.9 4e-15 seq75 93.3 4e-14 seq742 84.2 2e-11 seq631 84.2 2e-11 >seq48864 Length=438413 Score = 165 bits (182), Expect = 9e-36 Identities = 526/812 (65%), Gaps = 11/812 (1%) Strand=Plus/Plus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 |||| ||||||||||| | ||| ||| || | ||||||||| |||||| | | Sbjct 419683 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 419742 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 |||| |||| ||||| || || || || || ||||||||||||| | | ||| |||| Sbjct 419743 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 419802 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA-T 21307 |||| |||||||||||| | | | || | | || | |||||||| | |||| | Sbjct 419803 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTC-CAGCATAAGT 419861 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 |||| || ||||| || || || || ||| || | || ||||| | || | || Sbjct 419862 CTATTGGCAACAAACTCAATGTACTGCTTCATCAA-GCGCAGTTCATCTCAATGAGCTTC 419920 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTA-TAGAGACGGCTTCAACAATTATATT 21426 ||||| | ||| | ||| | || | ||| | | ||| || | | ||| ||| Sbjct 419921 ACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAAT--GATT 419978 Query 21427 TATTATCCTAGATGTACTAGGGGGATA---CAATAATTGTTTAAACATCAAACATGCAAA 21483 | || || || ||| ||||| | | |||| ||||||| | |||| Sbjct 419979 TCTTTCACTCTCTGCTCTA-ACGGATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAAC 420037 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 || ||| || |||| ||||| || || || | |||||| |||||||| | ||| ||||| Sbjct 420038 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 420097 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | || || | || | ||| ||||| | ||||| | || | |||||| || || || Sbjct 420098 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTC 420157 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATT 21662 || || ||||| || || | ||||| || || |||| | |||| ||| ||||| Sbjct 420158 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAAC 420217 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| | ||||| | || | |||| || || ||||| || | || ||| Sbjct 420218 GCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAA 420277 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 | |||| | ||| | ||| |||||||||||||||| Sbjct 420278 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAG 420337 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 |||| ||||| || || || || || || || ||||| | || |||| | | ||| | Sbjct 420338 GTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTCAACTT 420397 Query 21843 CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902 | |||||| | ||| |||||||||||| || ||||||| || |||| || | Sbjct 420398 CTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAG 420457 Query 21903 CCAATATATTTTTTATAAAATATCGTTCGTTA 21934 ||| | || ||| ||||||| || ||| Sbjct 420458 CCAGAACATGGGATATGAAATATCCCTCCTTA 420489 Score = 159 bits (176), Expect = 4e-34 Identities = 525/812 (65%), Gaps = 11/812 (1%) Strand=Plus/Plus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 |||| ||||||||||| | ||| ||| || | ||||||||| |||||| | | Sbjct 414760 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 414819 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 |||| |||| ||||| || || || || || ||||||||||||| | | ||| |||| Sbjct 414820 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 414879 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA-T 21307 |||| |||||||||||| | | | || | | || | |||||||| | |||| | Sbjct 414880 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTC-CAGCATAAGT 414938 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 |||| || ||||| || || || || ||| || | || ||||| | || | || Sbjct 414939 CTATTGGCAACAAACTCAATGTACTGCTTCATCAA-GCGCAGTTCATCTCAATGAGCTTC 414997 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTA-TAGAGACGGCTTCAACAATTATATT 21426 ||||| | ||| | ||| | || | ||| | | ||| || | | ||| ||| Sbjct 414998 ACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAAT--GATT 415055 Query 21427 TATTATCCTAGATGTACTAGGGGGATA---CAATAATTGTTTAAACATCAAACATGCAAA 21483 | || || || ||| ||||| | | |||| ||||||| | |||| Sbjct 415056 TCTTTCACTCTCTGCTCTA-ACGGATAGTGTAGCAGGCGTTTGAACATCAGGTAGGCAAC 415114 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 || ||| || |||| ||||| || || || | |||||| |||||||| | ||| ||||| Sbjct 415115 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 415174 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | || || | || | ||| ||||| | ||||| | | | |||||| || || || Sbjct 415175 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGACAGTAAAGAAGATTCCTTC 415234 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATT 21662 || || ||||| || || | ||||| || || |||| | |||| ||| ||||| Sbjct 415235 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAAC 415294 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| | ||||| | || | |||| || || ||||| || | || ||| Sbjct 415295 GCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAGAA 415354 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 | |||| | ||| | ||| |||||||||||||||| Sbjct 415355 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAG 415414 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 |||| ||||| || || || || || || || ||||| | || |||| | | ||| | Sbjct 415415 GTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTCAACTT 415474 Query 21843 CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902 | |||||| | ||| |||||||||||| || ||||||| || |||| || | Sbjct 415475 CTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAG 415534 Query 21903 CCAATATATTTTTTATAAAATATCGTTCGTTA 21934 ||| | || ||| ||||||| || ||| Sbjct 415535 CCAGAACATGGGATATGAAATATCCCTCCTTA 415566 >seq199 Length=4383281 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| || | || ||||||||| ||| || ||||| | | | Sbjct 4235057 TTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAACG 4234998 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || ||||| ||| || || |||||||| || ||||| ||||| || ||| Sbjct 4234997 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 4234938 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||||||||| |||||||| | | |||||| Sbjct 4234937 CATAAAATCAAAGGGATTTTCTGCATGAAATAT 4234905 >seq75 Length=11204613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | |||||||| | ||||| || || Sbjct 8448222 TCATCTCTGCTAATCAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8448281 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| |||||||| ||||| | || |||||||| || || || || || ||||| || Sbjct 8448282 AGCCAGAATATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 8448341 Query 21620 ACTAATCGTTCACC 21633 || | ||||| || Sbjct 8448342 ACAACACGTTCTCC 8448355 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||||| Sbjct 8444856 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 8444915 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||||| ||| ||| |||||||| |||||||||||||| Sbjct 8444916 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTC 8444955 >seq742 Length=4422061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 145475 AAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGATATGCATCGTGGAGCATGC 145533 |||||||| ||| |||| || || | ||| || ||||| ||| |||| || | | Sbjct 3104465 AAAAGATGTCATGATGGCACTATTGCATTCACAAGCATTGATGTGCACAATGATGTGGCC 3104524 Query 145534 CCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTATGATTACTTGGTTAGGTGGT 145593 || || || | || ||||| |||||| | ||||| || ||||| ||||| |||| Sbjct 3104525 CCCTCAAGACCTGGTGATTTGGAAATACTTGGTTACTGCATGATCCAGTGGTTCAGTGGC 3104584 Query 145594 AAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG-TAATGAATTCAAAAGTAGA 145652 | | || |||||||||||||| ||| ||| ||| |||| || || | ||||| |||| Sbjct 3104585 CATCTTCCTTGGGAGGATAATTTGAAAGATTCTAACTATGTTAGAGATTCCAAAATTAGA 3104644 >seq631 Length=3768130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 145475 AAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGATATGCATCGTGGAGCATGC 145533 |||||||| ||| |||| || || | ||| || ||||| ||| |||| || | | Sbjct 1754117 AAAAGATGTCATGATGGCACTATTGCATTCACAAGCATTGATGTGCACAATGATGTGGCC 1754058 Query 145534 CCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTATGATTACTTGGTTAGGTGGT 145593 || || || | || ||||| |||||| | ||||| || ||||| ||||| |||| Sbjct 1754057 CCCTCAAGACCTGGTGATTTGGAAATACTTGGTTACTGCATGATCCAGTGGTTCAGTGGC 1753998 Query 145594 AAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG-TAATGAATTCAAAAGTAGA 145652 | | || |||||||||||||| ||| ||| ||| |||| || || | ||||| |||| Sbjct 1753997 CATCTTCCTTGGGAGGATAATTTGAAAGATTCTAACTATGTTAGAGATTCCAAAATTAGA 1753938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531563375430000