Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq53 223 9e-53 seq75 87.8 5e-12 >seq53 Length=2810707 Score = 223 bits (246), Expect = 9e-53 Identities = 1058/1654 (64%), Gaps = 34/1654 (2%) Strand=Plus/Plus Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACG 363561 ||||||| || |||||||||||||| ||||| || ||| ||||| || ||| | Sbjct 1301860 TTGATGCTGCAATTGAAACATATAACCTTCTTTCTGAGAAGTGG-TTCACTCATGCCTCT 1301918 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATC-CACAGA--TGTCTTCTTGCTTTCTTCTA 363618 || || | | ||||||||| || |||| | |||| | ||| | | || ||||| Sbjct 1301919 CCCACTCTCTTCAATGCTGGCACC---AATCGCCCAGAACTTTCTACCTATTTCCTTCTG 1301975 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 || ||||| || || ||| || || || | ||| || || ||| | |||||| | ||| Sbjct 1301976 AACATGAAAGATGACAGCATTGAAGGGATTTATGATACTCTAAAGCAGTGTGCTTTGATT 1302035 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTA 363737 || ||| ||| || ||||||||||| | | | |||| || || | ||| || Sbjct 1302036 TCTAAGTCTGCTGGGGGAATTGGTGTTGCTGTGAGTTGTATTCGGGCTACTGG-CAGCTA 1302094 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 | || || || || | || ||||| || || || ||||| | || | || Sbjct 1302095 CCTTGCTGGGACTAATGGCAATTCCAATGGCCTTGTACCAATGCTGAGAGTATACAGTAA 1302154 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || | ||||| || || |||||| ||||| ||||| |||||||| || || Sbjct 1302155 TACAGCTCGATACGTAGATCAAGGTGGAAACAAGCGTCTTGGGGCATTTGCTATTTACCT 1302214 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 | ||| | ||| || || ||||||||||| || | ||| ||||| ||||| || Sbjct 1302215 GAAACCTTAGCATTTAGACATCTTTGAGTTTCTCGATTTAAAGAAGAACACAGGAAAGGA 1302274 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||| || ||| | ||||| |||| ||| |||||| |||| || | || ||||| | Sbjct 1302275 AGAACAGCATGCGAGGGATCTTTTCTTTGCCCTTTGGATTTCAGATCTCTTCATGAAATG 1302334 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 ||||| | | || | ||||| | | || ||| | || ||||| || || || Sbjct 1302335 GGTGGAAACTAATCAGGACTGGTCTTTGATGTGTCCAAATGAGTGTCCTGGCCTGGATGA 1302394 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 || ||||| || || | || ||||| ||||||||||| | |||| | || Sbjct 1302395 AGTTTGGGGAGAAGAATTTGAGAAGCTATATGAAAAGTATGAGAAGCAGGGTCACATTCA 1302454 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 || | || ||| |||| |||| ||| || || || || |||| ||||| | Sbjct 1302455 CAAAGTTGTGAAAGCTCAGCAGCTTTGGTATGCTATTATTGAGTCTCAGACAGAGACTGA 1302514 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 || ||||| ||| | |||||| |||| || || | ||| |||||||||| |||| || Sbjct 1302515 CAC-CCCTACATGCTCTACAAAAATTCCTGTAATCATAAGAGCAACCAGCAGAACCTGGG 1302573 Query 364218 TACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGAC 364277 |||| | |||||||| || || || || | || || ||| || ||| Sbjct 1302574 AGCAATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAGTATACCAGCAAAGAGGAGGT 1302633 Query 364278 TGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAAGATGGTACTTT 364334 ||| || |||||| | || || | || || || ||| | ||| || | Sbjct 1302634 TGCAGTTTGTAACTTGGCTTCCCTGGCCCTGAATATGTATGTCACATCAGAACACACGTA 1302693 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTT 364392 ||| || | || ||| || || | |||| | | | || | | || || Sbjct 1302694 CGACTTTAAGAAGCTGGCTGAAGTCACTGAAGTCAT--TGTTCGAAACTTGAATAAAATT 1302751 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT-TCTAATATGCGTCATCGCCC 364451 || | | || || || || ||||| || || | ||| || |||| || |||| ||| Sbjct 1302752 ATTAATAGAAACTACTACCCTATTCCAGAGGCATA-CGTATCAAATAAACGCCATCACCC 1302810 Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT-GGCATTTG 364510 ||||| |||| || || | || ||||| | |||||| || | |||| |||||| Sbjct 1302811 CATTGGAATTGGGGTTCAAGTTCTGGCTGATGCTTTTATCTTGAT-GAGATATCCATTTG 1302869 Query 364511 ATTCGCCTGACGCTCGTGTT-CTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 | || || | || ||| || |||||| | |||||| |||| || |||| || || Sbjct 1302870 AAAGTCCAGA-GGTCCAGTTACTGAATAAGCAAATCTTTCAAACTATTTATTATGGAGCC 1302928 Query 364570 ATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCC 364629 || || ||||| |||| ||| | || || || |||||||| || Sbjct 1302929 TTGGAAGCCAGCTGTGACCTGGCCAAAGAGTATGGTCCATAGGAAACCTATGAGGGCTCT 1302988 Query 364630 CCTCTTTCGCAGGGAAAAT-TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 || | ||| |||| | | |||| |||| | |||||||| || || | | || || Sbjct 1302989 CC-AGTAAGCAAAGAAATTCTTCAGTATGATGTGTGGAATGTTACTCCCACAGACCTGTG 1303047 Query 364689 GAACTGGGA--TACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTT 364746 | ||||| | | | | | | ||| || ||| ||||| | ||| | || Sbjct 1303048 GGACTGGAAACTTCTCAAGG--ACAAGATTGCAAAGTATGGTGTAAGAAACAGTTTACTT 1303105 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 | || || ||| | || ||| | ||||| |||||| | || || || |||| | | ||| Sbjct 1303106 ATTGCCCCAATGACTACTGCTGCAACTGCTCAGATCTTGGGGAATAATGAGTCCATTGAA 1303165 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 || | ||| ||||| | || | | | | || | || |||||||||| | | || ||| Sbjct 1303166 CCTTATACCAGCAACATCTACACTCACAGAGTCTTGTCAGGAGAATTTCAGATTGTAAAT 1303225 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTAT 364926 || || | || |||||| | || | || ||||| ||| ||||| || | Sbjct 1303226 CCTCACTTACTGAAAGATCTTACTGAGTGGGGCTTGTGGAATGAAGAGATGAAAAATCAG 1303285 Query 364927 ATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCT 364986 || || || ||||| ||| | |||| ||| |||| | || | || || |||||| Sbjct 1303286 ATTATTGCATGCAATGGCTCTATCCAGAGCATACCAGAAATTACTGATGACCTGAAGGAA 1303345 Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 |||| || || | |||||||| ||| | |||| | | | ||||| ||| | | Sbjct 1303346 CTTTATAAGACTATGTGGGAAATCTCCCAGAAAACTGTTCTCAAGATGGCAGCCAAGAGA 1303405 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC--ATGACTCAGCCAACCTCCG 365104 | | |||| || ||| || ||||| || || ||| | || || | || | || | Sbjct 1303406 GATACTTTCATTGATCAAAGTCAGTCTTTGAA--TATCCATATTGCTGAACCTAACTATG 1303463 Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 ||| || || ||||| ||||| || ||||| Sbjct 1303464 GCAAACTCACCAGTATGCACTTCTATGGCTGGAA 1303497 >seq75 Length=11204613 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||| | || ||||| || ||||||||||| | ||| || Sbjct 8448352 GAACGTGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCGTTTGCATCA 8448293 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 8448292 ATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCTAATGAACTGATT 8448233 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 8448232 AGCAGAGATGAGG 8448220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302506114686500