Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq46174 107 2e-18 seq5 107 2e-18 seq436 100 2e-16 seq338 98.7 8e-16 seq347 96.9 3e-15 seq472 91.5 1e-13 seq44605 89.7 4e-13 seq766 86.0 5e-12 seq50077 82.4 6e-11 seq199 82.4 6e-11 >seq46174 Length=2177 Score = 107 bits (118), Expect = 2e-18 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| | ||||| ||||| || || ||||||||| |||| || | Sbjct 1728 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCG 1787 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| |||||| ||| |||| Sbjct 1788 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGCCTCC----TGAT 1843 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||||| || || | || || Sbjct 1844 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 1903 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 1904 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGGTGG 1953 >seq5 Length=157846 Score = 107 bits (118), Expect = 2e-18 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| | ||||| ||||| || || ||||||||| |||| || | Sbjct 1047 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCG 1106 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| |||||| ||| |||| Sbjct 1107 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGCCTCC----TGAT 1162 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||||| || || | || || Sbjct 1163 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 1222 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 1223 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGGTGG 1272 >seq436 Length=2687165 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| || ||||| || || ||||| || || ||||| ||| |||| ||| || Sbjct 806822 AAAATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCC 806763 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| ||| | || || || || |||||||||||| |||| ||| Sbjct 806762 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAC 806703 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || | ||||||| | || | | || || Sbjct 806702 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 806643 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| |||||||||||| | || |||| || | || |||| || Sbjct 806642 AACATTCAGAAAGAGTCTACTCTGCACCTGGTCCTGCGCCTGAGAGGTGG 806593 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || ||||| ||| |||| |||| |||| Sbjct 806591 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 806532 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || |||||||||||| |||| ||||||| Sbjct 806531 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGATCAG 806472 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| ||||| || | ||||||| | || | | || || ||| Sbjct 806471 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 806412 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| |||||||||||| | || |||| Sbjct 806411 ATTCAGAAAGAGTCTACTCTGCACCTGGT 806383 >seq338 Length=5205875 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| ||||| || || ||||| ||| |||| || | Sbjct 2398247 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 2398188 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || |||| Sbjct 2398187 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 2398128 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||||| || || | || || Sbjct 2398127 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 2398068 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||| ||||| ||||| | | ||| | ||||||||| Sbjct 2398067 AACATCCAAAAGGAGTCCATGCTTCATCTTGTGTTGAGA 2398029 >seq347 Length=5549683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| ||||| || || ||||| ||| |||| || | Sbjct 1107712 AAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCT 1107771 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| | ||| |||| | || |||| Sbjct 1107772 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGAAAGGAATTCCTCCTGAT 1107831 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| ||||| || || ||||||| | || || | || || Sbjct 1107832 CAGCAAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGATGGGCATACTCTGTCTGACTAC 1107891 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| ||||| ||||| || | ||| | |||||||| Sbjct 1107892 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAG 1107929 >seq472 Length=1492349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| ||||| || || ||||| ||| |||| || | Sbjct 1223055 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 1223114 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| |||| | || ||| Sbjct 1223115 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGAAATTCCTTCCGAT 1223174 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||| | || || | || || Sbjct 1223175 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGACGGGCGTACTTTGTCTGACTAC 1223234 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 1223235 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTTCGTGGTGG 1223284 >seq44605 Length=175201 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| | ||||| ||| | || || ||||| ||| |||| ||| | Sbjct 1910 AAGATGCAGATTTTCATAAAAACCCTCCCAGGGAAGACCATCACCCTCGAGGTTGAGCCT 1851 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || |||| Sbjct 1850 TTGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 1791 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| ||| |||| || ||||||| || | || || Sbjct 1790 CAGCAAAGACTGATTTTTGCTGGCTAACAGTTGGAAGATGGGCGTACTTT----GACTAC 1735 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||||||||| || || ||| | ||||| ||| | || || || Sbjct 1734 AACATCCAAAAAGAGTCCACGATTCATCTTGTGTTAAGACTTCGTGGTGG 1685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| || || || || ||||| ||| | || || || Sbjct 860 AAGATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACCATCACCCTAGAGGTTGAACCC 801 Query 115343 AGCG-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | | || | | | | |||||| ||||| | ||| ||||| | || || Sbjct 800 TTTGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGGAAGGAATTCCTCCCGA 741 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| |||| ||| |||||||| || ||||||| | || || | || || Sbjct 740 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATACTTTGTCTGACTA 681 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||| ||||| ||||| || | ||| | ||||| ||| Sbjct 680 CAACATCCAAAAGGAGTCCACACTTCATCTTGTGTTAAGA 641 >seq766 Length=1455367 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| | |||||| || || ||||| || || ||||| ||| | || || | Sbjct 21294 AAGATGCAGACTTTTGTAAACACCCTCACAGGGAAGACCATCACCCTTGAGGTTGAACCG 21353 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || || | Sbjct 21354 TTGGATACAATAGAAAATGTAAAAGGCAAAATCCAGGATAAGGAAGGAATTCCTCCTGTT 21413 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||||| || || | || || Sbjct 21414 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGTGTACTTTGTCTGACTAC 21473 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | ||| ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 21474 ATCATCCAAAAGGAGTCCACACTTCATCTTGTGTTGAGACTTCGTGGTGG 21523 >seq50077 Length=1687503 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || |||| ||||| || || ||||| ||| || | || | Sbjct 738360 AAGATGCAGATTTTCGTAAAAATCCTCACAGGGAAGACCATCACCCTCAAGGTTGAACCG 738301 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || |||| Sbjct 738300 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 738241 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| | | |||||||| || |||||| | | || | || || Sbjct 738240 CAGCAAAGACTGATTTTTTCTGGCAAACAGTTGAAAGATGGGCATGCTTTGTCTGACTAC 738181 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| | | ||| | ||||||||| | || || || Sbjct 738180 AACATCCAAAAGGAGTCCCCGCTTCATCTTGTGTTGAGACTTCGTGGTGG 738131 >seq199 Length=4383281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/222 (70%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA---G 115339 || ||||| ||||| | ||||| || || || || ||||||||| |||| || | Sbjct 2495869 AAGATGCAGATTTTCAT-AAAACCCTTACAGGGAAGACCATTACCCTCGAGGTTGAACTG 2495811 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 || || ||| || | | |||||| ||||| ||||| ||||| | || | Sbjct 2495810 TC-AGATACAATG--GAAAGTGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCT 2495754 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 |||||||||||||| |||| ||| ||||| || ||| ||||||| | || | || Sbjct 2495753 GATCAGCAAAGACTGATTTTTGCTGGCAATCAGTTA-AAGATGAGTATAC----TCTGAC 2495699 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||||||| ||||| ||||| || | ||| | |||||| || Sbjct 2495698 TATAACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGCGA 2495657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425080918090000