Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq436 107 2e-18 seq309 100 3e-16 seq43265 96.9 3e-15 seq460 96.9 3e-15 seq50 96.9 3e-15 seq139 95.1 1e-14 >seq436 Length=2687165 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | || | || ||||| || ||||||||||| || Sbjct 806363 AGCCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAG 806422 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | |||||| || |||| Sbjct 806423 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAG 806482 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || ||| || ||| | | ||| | || || ||| ||| | Sbjct 806483 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 806542 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 806543 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 806591 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||| || | || | || ||||| || ||||||||||| || Sbjct 806593 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806652 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||||||||| |||||| Sbjct 806653 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 806712 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||| | | ||| | || || ||| || | Sbjct 806713 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACC 806772 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || ||||| || || || |||||||| Sbjct 806773 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 806819 >seq309 Length=2273895 Score = 100 bits (110), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 131001 CCATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGT 131059 |||||| |||||| | || | ||||||| | ||| | ||| ||||| || || ||||||| Sbjct 961395 CCATGATGCCACCTCCCAGATGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGT 961336 Query 131060 AATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGT 131119 | || || ||||| || || ||||| ||||| || | || | ||||||||||| Sbjct 961335 AGTCAGACAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGT 961276 Query 131120 CCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGG 131179 | | ||||| || | ||||| |||||| | | | | ||| | ||||| ||| Sbjct 961275 CGGATGGGATGCCCTACTTGTCTTGGATTTTGGCCGTCACATTCTCTATGGTATCCCTGG 961216 Query 131180 ACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 961215 GCTCAGCCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 961161 >seq43265 Length=2440742 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| || |||| ||||||||| | ||| | ||| ||||| || || ||||| || Sbjct 2202524 ATGATGCCGCCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAG 2202583 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | ||||| || || ||||| ||||| || | || | ||||||||||| Sbjct 2202584 TCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTG 2202643 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || || ||||| |||||| ||||| | ||| | || || ||| | Sbjct 2202644 GGTGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 2202703 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || ||| | ||| || || || || || || ||||| |||||||| Sbjct 2202704 CTGACCTTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2202756 >seq460 Length=2238155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| || |||||| | ||| | ||| ||||| | || |||||||| Sbjct 439801 ATGATGCCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAG 439742 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | ||||| || || ||||| ||||| || | || | ||||||||||| Sbjct 439741 TCAGAGACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCG 439682 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || | ||| || || ||||| | |||| ||||| | ||| | || || ||| | Sbjct 439681 GGTGAGATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 439622 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| | ||| || || || || || || | ||| |||||||| Sbjct 439621 TCGACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 439569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| || |||| | ||||||| | ||| | ||| ||||| || |||||||| Sbjct 439080 ATGATGCCGCCTCGCAGATGCAGCACCAGATGCAGGGTGGACTC----TGGATGTTGTAT 439025 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | ||||| || || ||||| ||||| || | || || ||||||||||| Sbjct 439024 TCAGAGACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAAGCGCTGCTGGTCG 438965 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || | ||| || || ||||| | |||| ||||| | ||| | || || ||| | Sbjct 438964 GGTGAGATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 438905 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| | ||| || || || || || || | ||| |||||||| Sbjct 438904 TCGACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 438852 >seq50 Length=2506936 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131011 CCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATG 131070 || |||| ||||||||| | || | ||| ||||| || || |||||||| || || Sbjct 1731579 CCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGC 1731520 Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| ||||| ||||| ||||| || | || | |||||||||||| || ||||| Sbjct 1731519 GTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGGGGGATG 1731460 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 || | ||||| |||||| ||||| | ||| | ||||| ||| ||||| ||| Sbjct 1731459 CCCTTCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCGACCTCG 1731400 Query 131191 ACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 | || | | || || || || || || | ||| ||||| Sbjct 1731399 AGGGAGATTTTCTTGCCCGTCAGGGTCTTCATGAAGATCTG 1731359 >seq139 Length=10686148 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||||||| | || | ||| ||||| || || |||||| | || Sbjct 400201 GCCGCCTCACAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGCAGTCAGA 400142 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGC------TGGTC 131120 || |||| ||||| ||||| ||||| || | || | ||||||| |||| Sbjct 400141 CAGCATGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTGGTGGTG 400082 Query 131121 CGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGA 131180 || ||||| || || ||||| |||||| ||||| | ||||| || || ||| Sbjct 400081 GGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCCATGGTGTCACTGGC 400022 Query 131181 CTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 400021 CTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 399968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471713366880000