Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq42965 105 5e-18 seq309 102 7e-17 seq436 95.1 1e-14 seq460 93.3 3e-14 >seq42965 Length=562198 Score = 105 bits (116), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 301411 CCCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 301470 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || || ||||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 301471 CAGGG----GGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 301526 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 301527 GAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 301586 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || ||||| || || || || |||||||| Sbjct 301587 CCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301638 Score = 105 bits (116), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 301639 CCCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 301698 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || || ||||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 301699 CAGGG----GGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 301754 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 301755 GAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 301814 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || ||||| || || || || |||||||| Sbjct 301815 CCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301866 Score = 105 bits (116), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 301867 CCCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 301926 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || || ||||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 301927 CAGGG----GGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 301982 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 301983 GAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 302042 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || ||||| || || || || |||||||| Sbjct 302043 CCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302094 Score = 105 bits (116), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 302095 CCCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 302154 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || || ||||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 302155 CAGGG----GGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 302210 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 302211 GAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 302270 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || ||||| || || || || |||||||| Sbjct 302271 CCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302322 Score = 105 bits (116), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 302323 CCCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 302382 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || || ||||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 302383 CAGGG----GGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 302438 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 302439 GAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 302498 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || ||||| || || || || |||||||| Sbjct 302499 CCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302550 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 302551 CCCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 302610 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || || ||||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 302611 CAGGG----GGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 302666 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 302667 GAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 302726 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || | ||||||||| || || || || || || || || ||||||||| Sbjct 302727 CGACCTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACGAAGATCTGCATT 302779 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||| || || ||||||||||| | || ||| | || |||| |||| Sbjct 301208 TGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGTTGT 301267 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| ||||| ||| | || || ||||| || | | Sbjct 301268 TTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTC 301327 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | ||||||| || | ||||||||| || || ||| Sbjct 301328 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTC 301387 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 301388 AGGGTCTTCACGAAGATCTGCAT 301410 >seq309 Length=2273895 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| |||||||| || || ||||||||||| | || || | | || Sbjct 961373 CAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATC 961314 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| |||||||||||| | || || ||||| ||||| || | ||||| ||||| Sbjct 961313 TTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGGATGCCCTACTTGTC 961254 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 |||| | |||| | | | || || | |||||| | || | ||||||||| Sbjct 961253 TTGGATTTTGGCCGTCACATTCTCTATGGTATCCCTGGGCTCAGCCTCGAGGGTGATGGT 961194 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| || || || || |||||||| || Sbjct 961193 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 961158 >seq436 Length=2687165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || ||||| || || ||||||||||| | Sbjct 806593 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806652 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 806653 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 806712 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||| ||| Sbjct 806713 ATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGTTCCA 806770 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || || || || || ||||| |||||||||||| Sbjct 806771 CCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCATTTTG 806823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 806380 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 806439 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| || || ||| | ||| ||||| || Sbjct 806440 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCC 806499 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| || | |||||||| Sbjct 806500 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGG 806557 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || || || |||||||| Sbjct 806558 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 806591 >seq460 Length=2238155 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| |||||| |||||||| | || ||||||||||| | Sbjct 439795 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 439736 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||||||| | || || ||||| ||||| | Sbjct 439735 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTGAG 439676 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | |||||| Sbjct 439675 ATGCCCTCCTTGTCTTGGGTTTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGA 439618 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || || | || |||||||| || Sbjct 439617 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 439566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404837446742500