Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq56 127 1e-24 seq44792 109 4e-19 seq549 105 4e-18 seq140 105 4e-18 seq46599 102 5e-17 seq47707 96.9 2e-15 seq138 93.3 3e-14 seq43265 89.7 3e-13 seq139 87.8 1e-12 seq436 86.0 4e-12 seq705 84.2 1e-11 seq43136 82.4 5e-11 seq497 82.4 5e-11 >seq56 Length=51353 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 34027 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 34086 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 34087 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 34121 >seq44792 Length=69869 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||| ||||||||||||| ||||||||| |||| || |||||||| Sbjct 41727 AAGCTTGTTCCCTTGACTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 41668 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 41667 TCATCCATTCATGCACGTCACTAATTAGATGACGA 41633 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 38632 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATTGGTCTCGT 38573 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 38572 GCTGGTATTTAGCCTTA 38556 >seq549 Length=3239410 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| | |||||||| Sbjct 2184921 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTAGGAATCTCGT 2184862 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||||| |||||||||||||||| Sbjct 2184861 TCATCCATTCATGCGCATCACTAATTAGATGAC 2184829 >seq140 Length=1865453 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| | |||||||| Sbjct 1589091 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTAGGAATCTCGT 1589032 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||||| |||||||||||||||| Sbjct 1589031 TCATCCATTCATGCGCATCACTAATTAGATGAC 1588999 >seq46599 Length=835 Score = 102 bits (112), Expect = 5e-17 Identities = 76/89 (85%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||| || |||||||| ||||| || ||||||||| |||| Sbjct 447 GTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCC 506 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| | ||||||||||||||||||| Sbjct 507 ATTCATGTGTGTCACTAATTAGATGACGA 535 >seq47707 Length=6282480 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| ||||||||| || ||||||||||||||| ||| | || Sbjct 1043806 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1043747 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || || || || | ||||| || || | ||| ||||| | || | ||||| || || Sbjct 1043746 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1043687 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | | ||||| || ||||| | | |||| | |||||| || | || || || Sbjct 1043686 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1043627 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | |||||| | ||| |||||||| || Sbjct 1043626 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCATCTT 1043591 >seq138 Length=4208748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 ||||||||||||| |||| ||||| |||||||| ||||| || |||||| || || Sbjct 2333732 CCGTTCCCTTGGCCATGGTATCGCTGGATAGTAGGTAGGGATAGTGGAAATCTCATTCAT 2333673 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||||||| | |||||||||||||||||| Sbjct 2333672 CCATTCATGCACATCACTAATTAGATGACGA 2333642 >seq43265 Length=2440742 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| || ||||| ||||| ||| || ||| ||| || || || || || ||||| Sbjct 2202530 CCGCCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAA 2202589 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| ||||||||||| || || || || | || ||| Sbjct 2202590 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTGGGTGGG 2202649 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT----TTC 38266 | ||| || ||||| ||||| ||| ||||||| || || | |||| | Sbjct 2202650 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGT---CACTGGGCCTG 2202706 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | ||| | || || || || ||||||| ||| |||||||| |||||||| ||| Sbjct 2202707 ACCTT-GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTT 2202760 >seq139 Length=10686148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || |||| || ||||| ||||| || || ||| ||| || || || ||| | ||| Sbjct 400203 TTGCCGCCTCACAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGCAGTCA 400144 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGC------GTTGTTGA 38201 |||| | || | || || | ||||| ||||||||||| || | | || || Sbjct 400143 GACAGCATGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTGGTGG 400084 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 | || ||||| ||| || ||||| ||||| ||| ||||||| | || || | Sbjct 400083 TGGGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCCATGGTGTCACTG 400024 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || || | || || || || ||||||| ||| |||||||| |||||||| ||| Sbjct 400023 GCCTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTT 399964 >seq436 Length=2687165 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || ||||| ||| || ||||| ||||| ||||| Sbjct 806365 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806424 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || ||||| | ||| Sbjct 806425 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGG 806484 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || ||||||||||| | || || | || || Sbjct 806485 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 806544 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| |||||||| |||||||| Sbjct 806545 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 806591 >seq705 Length=5220317 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG----GGGTAATCTCGTT 25957 ||||| |||||||||| ||| ||||| ||||||||||| |||| ||| ||||| | Sbjct 2301512 AAGCCTGTTCCCTTGGTTGTAGTTTCACTAGATAGTAGGTAGGGATAGGGGAATCTGACT 2301571 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||| |||||| || |||||| ||||||||| Sbjct 2301572 CATCCATTCATGGGCATCACTAGTTAGATGAC 2301603 >seq43136 Length=8286634 Score = 82.4 bits (90), Expect = 5e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 19952 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAA 20011 |||||||||||||||| |||||||||| || ||||||| | |||||||||||| | | Sbjct 7541976 TCTTCAAAGTTCTTTTTAACTTTCCCTTACAGTACTTGGTGACTATCGGTCTCGTGCTGG 7542035 Query 20012 TATTTAGCCT 20021 |||||||||| Sbjct 7542036 TATTTAGCCT 7542045 >seq497 Length=2285673 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| || |||| |||| || |||||||||||| || |||| | || Sbjct 540704 CAACACAAGATGAAGCATGGACTCCCTTTGGATGTTGTAATCAGAC-AAGTACGTCCATC 540762 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || || ||||| || ||||| | || ||||| ||||| | || | ||||| || || Sbjct 540763 TTCCAACTGTTTGCCAGCAAAATTCAGTCGTTGCTGATCAGGAGGAATTCCTTCCTTATC 540822 Query 38225 CATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | ||| |||| || || ||| | | | |||||| |||| | || | || || | Sbjct 540823 C-TAAATTTTGGCGTTTACAGTTTCTATTGTATCTGACAGTTCAGCCTCGAGGGTGATGG 540881 Query 38284 TTTTACCCGTCAAGG-TTTTCACGAATATCTGCATGTT 38320 | | || || | || |||| | ||| |||||||| || Sbjct 540882 TCTACCCTGTAAGGGTTTTTTATGAAAATCTGCATCTT 540919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334740029923250