Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq43265 95.1 1e-14 seq598 84.2 2e-11 >seq43265 Length=2440742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || || || ||||| |||| || || ||||||| || | || Sbjct 2202764 ACGCAAAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTCA 2202705 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | | |||||| |||||| | ||| |||||| ||||| || || || |||| Sbjct 2202704 GGCCCAGTGACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATCCCAC 2202645 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | |||| ||||| | || |||||||||||||| | ||||||| |||||| | | Sbjct 2202644 CCAACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTG 2202585 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| ||||| || ||| | ||||| Sbjct 2202584 ACTATAACATCCAGAAAGAGTCCACCCTCCATCTGGTGCT 2202545 >seq598 Length=3788045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || | || || | ||||| |||| || || | || Sbjct 1806468 ATGCAGATTTTTGTAAAAACCCTGCCAGGGAAGACTATCACCCTCGAGGTTGAACCATCA 1806409 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || | || | || |||| |||| ||| || || ||||| ||||| |||||| Sbjct 1806408 GATACAACAGAA--AATGTAAAAGCCAAAATTCAG-GATAAGGAAGGAATTCCTCCTGAC 1806352 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | |||||| | ||||| || || ||||||| | ||| || || | | Sbjct 1806351 CAGCAAAGACTGATTTTTTCTGGCAAGCAGTTGGAAGATGGGAGTACTCTGTCTGACTGC 1806292 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || ||||| ||||||||||| ||| | ||| | || || Sbjct 1806291 AACATCCAAAAGGAATCCACGCTTCATCTTGTGTTGAGACT 1806251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433059979861250